[chimerax-users] Selecting residues in two chains

[McClean, Phillip]

Hi Elaine,

Your suggestion worked to display just those parts of the two chains.

I see that that for other actions, such has mlp, I also need to specify the residues.

Thanks again for your help.

Phil
________________________________
From: Elaine Meng <meng at cgl.ucsf.edu>
Sent: Thursday, October 27, 2022 4:20 PM
To: McClean, Phillip <phillip.mcclean at ndsu.edu>
Cc: chimerax-users at cgl.ucsf.edu <chimerax-users at cgl.ucsf.edu>
Subject: Re: [chimerax-users] Selecting residues in two chains

Hi Phil,
Maybe the problem is that you needed to hide the other stuff first?  Here are some possible commands:

hide target ar
show /B:19-24 /C:1-190 target ar

...or if you only want to show atoms, not the ribbons, omit the  "target ar" from the "show" command; in show/hide commands, target a is atoms (default),  and target r or c is ribbons aka cartoons.
<https://rbvi.ucsf.edu/chimerax/docs/user/commands/show.html>

The slash symbol indicates chain ID, and the colon indicates residue numbers or names:
<https://rbvi.ucsf.edu/chimerax/docs/user/commands/atomspec.html#hierarchy>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On Oct 27, 2022, at 1:04 PM, McClean, Phillip via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
>
> Hi Everyone,
>
> I have a .pdb file created using AF2 Multimer.  It consists of two chains, B and C.  Chain B is a protein with 315 residues, while Chain C is a protein with 662 residues.  Each chain is modeled with structured and unstructured regions.  I would like to only show residues 19-24 of Chain B and residues 1-190 of Chain C in the display window.
>
> I have tried using the information provided on the "Command-Line Target Specification" page, but I have not had any success with just displaying those ranges of residues in the display window.  My goal is to highlight specific features of those ranges of residues to display their interaction.
>
> Thanks for any information you can provide.
>
> Phil McClean

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