[chimerax-users] fitmap command in chimerax

[Yanhe Zhao]

Dear Tom and Elaine,

Thanks a lot for your favorable reply. I will most likely follow Tom's
idea: do seq fit manually.

Thanks and have a nice day,
Yanhe

On Wed, Sep 21, 2022, 1:07 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Yanhe,
> I could not reproduce this problem.  Even if I have the two copies of the
> same atomic model in exactly the same place before I run the command:
>
> fitmap #2,3 inMap #1 seq 2 res 3.7
>
> ... they go to different places.  But if you use "shift false" it will
> prevent shifting during fitting, so I don't think you want to use that
> option.
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>
>
> > On Sep 21, 2022, at 8:17 AM, Yanhe Zhao via ChimeraX-users <
> chimerax-users at cgl.ucsf.edu> wrote:
> >
> > Greeting there developer,
> >
> > I am using fitmap command of chimerax to fit pdb to map, the command as
> below:
> > fitmap #2,3 inMap #1 seq 2 res 3.7
> > #2 and #3 are copy of each other and I manually placed them in different
> positions in map,
> > #2 and #3 come to same position after the command running, I had shift
> option false, but come to same result.
> > I remember it works in chimera.
> > Could you please point me out?
> >
> > Thanks and have a nice day,
> > Yanhe
>
>
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