[chimerax-users] Reasign secondary structure for back-bone trace

Eric Pettersen pett at cgl.ucsf.edu
Tue Jan 17 10:19:40 PST 2023


Hi Enrico,
	Do you have all the backbone atoms, including the backbone oxygen?  What version of ChimeraX are you using?

--Eric

	Eric Pettersen
	UCSF Computer Graphics Lab


> On Jan 17, 2023, at 7:26 AM, Enrico Martinez via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> Dear Chimera-X users!
> I am working on the visualization of a trajectory containing only back-bone atoms of the protein obtained from the PCA. When I load this multi-pdb ensemble to Chimera-X I can see only back-bone traces without any secondary structure information. I've tried to use dssp command to re-assign the secondary structure but it did not change the visualization state. Would it be possible to do it in some automatic fashion via some built-in command?
> Many thanks in advance
> Cheers
> Enrico
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