[chimerax-users] installing python packages into chimeraX

[Rangarajan, Amith]

Dear Eric,

that is super cool !

i typed pip install pandas into the command line and it got installed
[cid:68637c02-25ad-4a0d-833b-d987c7ae690b]
replying with a suitable subject line for reference.

thanks
amith
________________________________
From: Eric Pettersen <pett at cgl.ucsf.edu>
Sent: Thursday, January 26, 2023 10:44 AM
To: Rangarajan, Amith <Amith.Rangarajan at ucsf.edu>
Cc: ChimeraX Users Help <ChimeraX-users at cgl.ucsf.edu>
Subject: Re: recent query

Hi Amith, You can install packages into ChimeraX with its “pip” command, e. g. “pip install pandas”. —Eric On Jan 26, 2023, at 10: 03 AM, Rangarajan, Amith <Amith. Rangarajan@ ucsf. edu> wrote: ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍ ‍
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Hi Amith,
You can install packages into ChimeraX with its “pip” command, e.g. “pip install pandas”.

—Eric

On Jan 26, 2023, at 10:03 AM, Rangarajan, Amith <Amith.Rangarajan at ucsf.edu<mailto:Amith.Rangarajan at ucsf.edu>> wrote:

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Dear Eric,

thanks for taking time to answer my query. It was very detailed and i am beginning to understand how bundles work on chimerax.

i am working on a methods paper that uses sidechain center of masses as a representation of mutation position and generates clusters to intrepret the impact of the mutations.

i tried scripting this, but i realised that pandas library is not present in chimerax (?) and i did not proceed further.

is there a way to include scikit learn , pandas libraries in chimerax script?

thanks once again for all your support !

best
amith

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