[chimerax-users] installing python packages into chimeraX

[Eric Pettersen]

Happy to help.  Glad it worked. :-)

—Eric

> On Jan 26, 2023, at 11:00 AM, Rangarajan, Amith via ChimeraX-users <chimerax-users at cgl.ucsf.edu> wrote:
> 
> This Message Is From an External Sender
> This message came from outside your organization.
> Dear Eric,
> 
> that is super cool !
> 
> i typed pip install pandas into the command line and it got installed 
> <image.png>
> replying with a suitable subject line for reference.
> 
> thanks
> amith
> From: Eric Pettersen <pett at cgl.ucsf.edu <mailto:pett at cgl.ucsf.edu>>
> Sent: Thursday, January 26, 2023 10:44 AM
> To: Rangarajan, Amith <Amith.Rangarajan at ucsf.edu <mailto:Amith.Rangarajan at ucsf.edu>>
> Cc: ChimeraX Users Help <ChimeraX-users at cgl.ucsf.edu <mailto:ChimeraX-users at cgl.ucsf.edu>>
> Subject: Re: recent query
>  
> This Message Is From an External Sender 
> This message came from outside your organization. 
> Hi Amith,
> You can install packages into ChimeraX with its “pip” command, e.g. “pip install pandas”.
> 
> —Eric
> 
>> On Jan 26, 2023, at 10:03 AM, Rangarajan, Amith <Amith.Rangarajan at ucsf.edu <mailto:Amith.Rangarajan at ucsf.edu>> wrote:
>> 
>> This Message Is From an External Sender
>> This message came from outside your organization.
>> Dear Eric,
>> 
>> thanks for taking time to answer my query. It was very detailed and i am beginning to understand how bundles work on chimerax.
>> 
>> i am working on a methods paper that uses sidechain center of masses as a representation of mutation position and generates clusters to intrepret the impact of the mutations.
>> 
>> i tried scripting this, but i realised that pandas library is not present in chimerax (?) and i did not proceed further.
>> 
>> is there a way to include scikit learn , pandas libraries in chimerax script?
>> 
>> thanks once again for all your support !
>> 
>> best
>> amith
> 
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