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Opened 2 hours ago
#19527 new defect
ChimeraX bug report submission
| Reported by: | Owned by: | ||
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Unassigned | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | ||
| Project: |
Description
The following bug report has been submitted:
Platform: Linux-6.8.0-85-generic-x86_64-with-glibc2.39
ChimeraX Version: 1.10.1 (2025-07-24 20:15:27 UTC)
Description
Replace this text with list of actions that caused this problem to occur
Log:
UCSF ChimeraX version: 1.10.1 (2025-07-24)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /y/people/mrn533/Reconstructions/SPA_rcMCP_His_proheads/job052_postprocess_masked.mrc
Opened job052_postprocess_masked.mrc as #1, grid size 512,512,512, pixel 0.9,
shown at level 0.0157, step 2, values float32
> open
> /y/people/mrn533/Reconstructions/SPA_rcMCP_His_proheads/fold_rcscamcp_1mer/fold_rcscamcp_1mer_model_0.cif
Chain information for fold_rcscamcp_1mer_model_0.cif #2
---
Chain | Description
A | .
Computing secondary structure
> volume #1 step 1
> ui mousemode right select
Drag select of 397 residues
Drag select of 400 residues
> ui mousemode right "translate selected models"
> view matrix models #2,1,0,0,29.714,0,1,0,-13.585,0,0,1,207.31
> view matrix models #2,1,0,0,45.401,0,1,0,32.82,0,0,1,299.47
> view matrix models #2,1,0,0,125.25,0,1,0,50.649,0,0,1,308.52
> view matrix models #2,1,0,0,86.396,0,1,0,29.342,0,0,1,303.28
> view matrix models #2,1,0,0,156.22,0,1,0,123.01,0,0,1,220.51
> view matrix models #2,1,0,0,118.59,0,1,0,145.08,0,0,1,207.98
> view matrix models #2,1,0,0,88.995,0,1,0,94.131,0,0,1,171.22
> view matrix models #2,1,0,0,99.59,0,1,0,107.39,0,0,1,185.87
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.6902,-0.53313,0.48928,102.45,0.58173,0.81094,0.063001,115.94,-0.43036,0.24114,0.86985,178.35
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.6902,-0.53313,0.48928,151.24,0.58173,0.81094,0.063001,153.21,-0.43036,0.24114,0.86985,230.05
> view matrix models
> #2,0.6902,-0.53313,0.48928,113.72,0.58173,0.81094,0.063001,126.66,-0.43036,0.24114,0.86985,231.57
> view matrix models
> #2,0.6902,-0.53313,0.48928,142.17,0.58173,0.81094,0.063001,139.81,-0.43036,0.24114,0.86985,253.06
> view matrix models
> #2,0.6902,-0.53313,0.48928,137.66,0.58173,0.81094,0.063001,134.88,-0.43036,0.24114,0.86985,249.27
> view matrix models
> #2,0.6902,-0.53313,0.48928,113.4,0.58173,0.81094,0.063001,128.22,-0.43036,0.24114,0.86985,259.96
> view matrix models
> #2,0.6902,-0.53313,0.48928,106.25,0.58173,0.81094,0.063001,156.98,-0.43036,0.24114,0.86985,273.95
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.55773,-0.35812,0.74879,104.19,0.37914,0.91244,0.15398,154.11,-0.73837,0.19802,0.64467,269.94
> view matrix models
> #2,0.41333,-0.78271,0.46532,105.13,0.37827,0.61242,0.69415,158.71,-0.82829,-0.1109,0.54921,271.21
> view matrix models
> #2,0.5264,-0.55654,0.64278,105.15,-0.082175,0.71915,0.68997,152.48,-0.84626,-0.41602,0.33283,272.83
> view matrix models
> #2,0.63131,-0.51789,0.57727,105.77,0.22514,0.83468,0.50261,154.32,-0.74213,-0.18733,0.64354,273.22
> ui mousemode right "translate selected models"
> view matrix models
> #2,0.63131,-0.51789,0.57727,125.45,0.22514,0.83468,0.50261,120.49,-0.74213,-0.18733,0.64354,280.39
> view matrix models
> #2,0.63131,-0.51789,0.57727,120.99,0.22514,0.83468,0.50261,119.23,-0.74213,-0.18733,0.64354,277.43
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.44462,-0.46572,0.76513,119.09,0.06253,0.86826,0.49215,117.03,-0.89353,-0.17098,0.41517,274.69
> view matrix models
> #2,0.47953,-0.40927,0.77624,119.05,-0.099874,0.85338,0.51164,115.37,-0.87182,-0.32287,0.36834,276.07
> ui mousemode right "translate selected models"
[Repeated 1 time(s)]
> view matrix models
> #2,0.47953,-0.40927,0.77624,125.3,-0.099874,0.85338,0.51164,126.23,-0.87182,-0.32287,0.36834,277.36
> view matrix models
> #2,0.47953,-0.40927,0.77624,126.29,-0.099874,0.85338,0.51164,121.61,-0.87182,-0.32287,0.36834,275.75
> ui mousemode right "rotate selected models"
> view matrix models
> #2,0.29596,-0.57123,0.76557,125.54,0.23901,0.82027,0.51964,125.82,-0.92481,0.029187,0.3793,272.15
> view matrix models
> #2,0.29497,-0.52866,0.79594,125.27,0.20779,0.84855,0.48661,125.1,-0.93264,0.021852,0.36014,272.05
> fitmap sel inMap #1
Fit molecule fold_rcscamcp_1mer_model_0.cif (#2) to map
job052_postprocess_masked.mrc (#1) using 2985 atoms
average map value = 0.002687, steps = 92
shifted from previous position = 2.3
rotated from previous position = 3.56 degrees
atoms outside contour = 2718, contour level = 0.01567
Position of fold_rcscamcp_1mer_model_0.cif (#2) relative to
job052_postprocess_masked.mrc (#1) coordinates:
Matrix rotation and translation
0.33523381 -0.55074378 0.76439492 123.38736251
0.24117168 0.83447476 0.49546756 124.23073521
-0.91074394 0.01825293 0.41256795 271.06397855
Axis -0.24941158 0.87549500 0.41388690
Axis point 227.64685029 0.00000000 -25.49503155
Rotation angle (degrees) 73.07388575
Shift along axis 190.17898100
> ui mousemode right "rotate selected models"
> view matrix models
> #2,-0.97373,0.21883,-0.062948,98.599,-0.17651,-0.90003,-0.39848,131.03,-0.14385,-0.3769,0.91502,285.17
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-packages/chimerax/ui/gui.py",
line 823, in changeEvent
if isinstance(arg, QToolBar):
^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-packages/chimerax/ui/gui.py",
line 916, in hide_floating_tools
window.shown = False
^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-packages/chimerax/ui/gui.py",
line 1185, in settings_ui_widget
sb = sbar.widget
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/ui/core_settings_ui.py", line 127, in __init__
self.options_widget = CategorizedSettingsPanel(tabs_as_side_menu=True,
help_cb=lambda *, category=None,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 464, in __init__
# We don't simply use settings.save() when all options are being saved
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 319, in __init__
return self.set_option_shown(option, True)
^^^^^^^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 189, in __init__
self._category_areas = QStackedWidget()
^^^^^^^^^^^^^^^^^^^^
TypeError: 'tabs_as_side_menu' is an unknown keyword argument
TypeError: 'tabs_as_side_menu' is an unknown keyword argument
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 189, in __init__
self._category_areas = QStackedWidget()
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-packages/chimerax/ui/gui.py",
line 823, in changeEvent
if isinstance(arg, QToolBar):
^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-packages/chimerax/ui/gui.py",
line 916, in hide_floating_tools
window.shown = False
^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-packages/chimerax/ui/gui.py",
line 1185, in settings_ui_widget
sb = sbar.widget
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/ui/core_settings_ui.py", line 127, in __init__
self.options_widget = CategorizedSettingsPanel(tabs_as_side_menu=True,
help_cb=lambda *, category=None,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 464, in __init__
# We don't simply use settings.save() when all options are being saved
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 319, in __init__
return self.set_option_shown(option, True)
^^^^^^^^^^^^^^^^^
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 189, in __init__
self._category_areas = QStackedWidget()
^^^^^^^^^^^^^^^^^^^^
TypeError: 'tabs_as_side_menu' is an unknown keyword argument
TypeError: 'tabs_as_side_menu' is an unknown keyword argument
File "/usr/lib/ucsf-chimerax/lib/python3.11/site-
packages/chimerax/ui/options/containers.py", line 189, in __init__
self._category_areas = QStackedWidget()
^^^^^^^^^^^^^^^^^^^^
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 570.172.08
OpenGL renderer: NVIDIA GeForce GT 1030/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.11.4
Locale: en_GB.UTF-8
Qt version: PyQt6 6.8.1, Qt 6.8.2
Qt runtime version: 6.8.2
Qt platform: xcb
XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: OEGStone
Model: BOAMOT-494
OS: Ubuntu 24.04
Architecture: 64bit ELF
Virtual Machine: none
CPU: 6 Intel(R) Core(TM) i5-9500 CPU @ 3.00GHz
Cache Size: 9216 KB
Memory:
total used free shared buff/cache available
Mem: 15Gi 11Gi 614Mi 326Mi 4.3Gi 4.3Gi
Swap: 4.0Gi 4.0Gi 532Ki
Graphics:
01:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP108 [GeForce GT 1030] [10de:1d01] (rev a1)
Subsystem: ASUSTeK Computer Inc. GP108 [GeForce GT 1030] [1043:85f4]
Kernel driver in use: nvidia
Installed Packages:
aiohappyeyeballs: 2.6.1
aiohttp: 3.13.1
aiosignal: 1.4.0
alabaster: 1.0.0
annotated-types: 0.7.0
anyio: 4.12.0
appdirs: 1.4.4
asttokens: 3.0.1
attrs: 25.4.0
babel: 2.17.0
beautifulsoup4: 4.13.5
blockdiag: 3.0.0
blosc2: 3.12.2
build: 1.3.0
certifi: 2025.11.12
cftime: 1.6.5
charset-normalizer: 3.4.4
ChimeraX-AddCharge: 1.5.20
ChimeraX-AddH: 2.2.8
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.6.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 3.1.1
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Animations: 1.0
ChimeraX-Aniso: 1.3.2
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.61.4
ChimeraX-AtomicLibrary: 14.2.1
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.3
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-Boltz: 1.1
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.6.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.5
ChimeraX-ChemGroup: 2.0.2
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.3.0
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.11
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.5
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.4
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.4
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5.3
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.4
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.7.3
ChimeraX-Label: 1.2
ChimeraX-LinuxSupport: 1.0.1
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.2
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.2.2
ChimeraX-MCopy: 1.0
ChimeraX-MCPServer: 0.1.0
ChimeraX-MDcrds: 2.17.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-Minimize: 1.3.2
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.16
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.22
ChimeraX-ModelPanel: 1.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0.1
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.15.2
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.11
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.5
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.4
ChimeraX-ProfileGrids: 1.4.2
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.5
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.3
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.2
ChimeraX-Scenes: 0.3.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.3
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.10
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.17.3
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.1
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.2
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.49.1
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDock: 1.5.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.5
ChimeraX-Zone: 1.0.1
click: 8.3.1
colorama: 0.4.6
comm: 0.2.3
contourpy: 1.3.3
coverage: 7.13.0
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.1.4
debugpy: 1.8.19
decorator: 5.2.1
distro: 1.9.0
docutils: 0.21.2
executing: 2.2.1
filelock: 3.19.1
fonttools: 4.61.1
frozenlist: 1.8.0
funcparserlib: 2.0.0a0
glfw: 2.10.0
grako: 3.16.5
h11: 0.16.0
h5py: 3.15.1
html2text: 2025.4.15
httpcore: 1.0.9
httpx: 0.28.1
httpx-sse: 0.4.3
idna: 3.11
ihm: 2.2
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.3.0
ipykernel: 6.30.1
ipython: 9.5.0
ipython_pygments_lexers: 1.1.1
ipywidgets: 8.1.8
jedi: 0.19.2
Jinja2: 3.1.6
jsonschema: 4.25.1
jsonschema-specifications: 2025.9.1
jupyter_client: 8.6.3
jupyter_core: 5.9.1
jupyterlab_widgets: 3.0.16
kiwisolver: 1.4.9
line_profiler: 5.0.0
lxml: 6.0.2
lz4: 4.3.2
Markdown: 3.8.2
MarkupSafe: 3.0.3
matplotlib: 3.10.7
matplotlib-inline: 0.2.1
mcp: 1.18.0
msgpack: 1.1.1
multidict: 6.7.0
ndindex: 1.10.1
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.14.1
numpy: 1.26.4
nvidia-nvjitlink-cu12: 12.9.86
OpenMM: 8.2.0
OpenMM-CUDA-12: 8.2.0
openvr: 1.26.701
packaging: 25.0
ParmEd: 4.2.2
parso: 0.8.5
pep517: 0.13.1
pexpect: 4.9.0
pickleshare: 0.7.5
pillow: 11.3.0
pip: 25.2
pkginfo: 1.12.1.2
platformdirs: 4.5.1
pluggy: 1.6.0
prompt_toolkit: 3.0.52
propcache: 0.4.1
psutil: 7.0.0
ptyprocess: 0.7.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pybind11: 3.0.1
pycollada: 0.8
pydantic: 2.12.5
pydantic-settings: 2.12.0
pydantic_core: 2.41.5
pydicom: 2.4.4
Pygments: 2.18.0
pynmrstar: 3.3.6
pynrrd: 1.0.0
PyOpenGL: 3.1.10
PyOpenGL-accelerate: 3.1.10
pyopenxr: 1.1.4501
pyparsing: 3.2.5
pyproject_hooks: 1.2.0
PyQt6: 6.9.1
PyQt6-Qt6: 6.9.2
PyQt6-WebEngine: 6.9.0
PyQt6-WebEngine-Qt6: 6.9.2
PyQt6_sip: 13.10.2
pytest: 9.0.2
pytest-cov: 7.0.0
python-dateutil: 2.9.0.post0
python-dotenv: 1.2.1
python-multipart: 0.0.21
pytz: 2025.2
pyzmq: 27.1.0
qtconsole: 5.7.0
QtPy: 2.4.3
qtshim: 1.2
RandomWords: 0.4.0
referencing: 0.37.0
requests: 2.32.5
roman-numerals: 4.0.0
roman-numerals-py: 4.0.0
rpds-py: 0.30.0
scipy: 1.14.0
setuptools: 80.9.0
sfftk-rw: 0.8.1
six: 1.17.0
snowballstemmer: 3.0.1
sortedcontainers: 2.4.0
soupsieve: 2.8
Sphinx: 8.2.3
sphinx-autodoc-typehints: 3.2.0
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
sse-starlette: 3.0.4
stack-data: 0.6.3
starlette: 0.50.0
superqt: 0.7.6
tables: 3.10.2
tcia_utils: 1.5.1
tifffile: 2025.3.13
tinyarray: 1.2.5
tornado: 6.5.4
traitlets: 5.14.3
typing-inspection: 0.4.2
typing_extensions: 4.15.0
tzdata: 2025.3
urllib3: 2.6.2
uvicorn: 0.38.0
wcwidth: 0.2.14
webcolors: 24.11.1
wheel: 0.45.1
wheel-filename: 1.4.2
widgetsnbextension: 4.0.15
yarl: 1.22.0
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