ChimeraX bug report submission

[anurag@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.26200
ChimeraX Version: 1.10.dev202501142332 (2025-01-14 23:32:44 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010d

Thread 0x00003d20 (most recent call first):
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\socket.py", line 836 in create_connection
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\http\client.py", line 945 in connect
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\http\client.py", line 1451 in connect
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\http\client.py", line 979 in send
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\http\client.py", line 1041 in _send_output
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\http\client.py", line 1281 in endheaders
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\http\client.py", line 1332 in _send_request
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\http\client.py", line 1286 in request
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\urllib\request.py", line 1348 in do_open
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\urllib\request.py", line 1391 in https_open
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\urllib\request.py", line 496 in _call_chain
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\urllib\request.py", line 536 in _open
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\urllib\request.py", line 519 in open
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\urllib\request.py", line 216 in urlopen
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\toolshed\available.py", line 62 in load
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\toolshed\__init__.py", line 516 in reload_available
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\threading.py", line 975 in run
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\threading.py", line 1038 in _bootstrap_inner
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\threading.py", line 995 in _bootstrap

Current thread 0x0000249c (most recent call first):
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\win32com\client\__init__.py", line 103 in Moniker
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\win32com\client\__init__.py", line 86 in GetObject
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\wmi.py", line 174 in 
  File "", line 241 in _call_with_frames_removed
  File "", line 940 in exec_module
  File "", line 690 in _load_unlocked
  File "", line 1147 in _find_and_load_unlocked
  File "", line 1176 in _find_and_load
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\bug_reporter\tool.py", line 647 in _win32_info
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\bug_reporter\tool.py", line 635 in system_summary
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\bug_reporter\tool.py", line 121 in __init__
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\bug_reporter\tool.py", line 369 in show_bug_reporter
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\bug_reporter\crash_report.py", line 217 in _show_bug_report_dialog
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\bug_reporter\crash_report.py", line 45 in _report
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\triggerset.py", line 149 in invoke
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\triggerset.py", line 248 in _activate
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\triggerset.py", line 217 in activate
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\triggerset.py", line 393 in activate_trigger
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\updateloop.py", line 65 in draw_new_frame
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\updateloop.py", line 150 in _redraw_timer_callback
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1050 in init
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py", line 1213 in 
  File "", line 88 in _run_code
  File "", line 198 in _run_module_as_main
Windows fatal exception: access violation

Windows fatal exception: access violation

Thread 0x00002ec4Thread 0x (most recent call first):
00002ec4 (most recent call first):
  File "  File C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\threading.py""C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\threading.py, line "324, line  in wait324
 in   File wait"
C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\threading.py  File "", line C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\threading.py622" in , line wait622
 in   File wait"
C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\threading.py  File "", line C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\threading.py1392" in , line run1392
 in   File run"
C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\threading.py  File "", line C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\threading.py1038" in , line _bootstrap_inner1038
 in   File _bootstrap_inner"
C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\threading.py  File "", line C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\threading.py995" in , line _bootstrap995
 in 
_bootstrapThread 0x
0000249c
 (most recent call first):
Thread 0x  File 0000249c" (most recent call first):
C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\chem_group\support.py  File "", line C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\chem_group\support.py40" in , line call_c_plus_plus40
 in   File call_c_plus_plus"
C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\chem_group\chem_group.py  File "", line C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\chem_group\chem_group.py233" in , line find_group233
 in   File find_group"
C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\hbonds\hbond.py  File "", line C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\hbonds\hbond.py770" in , line _find_acceptors770
 in   File _find_acceptors"
C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\hbonds\hbond.py  File ""C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\hbonds\hbond.py", line 498, line  in 498find_hbonds in 
find_hbonds  File 
"  File C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\addh\hbond.py""C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\addh\hbond.py", line 259, line  in 259add_hydrogens in 
add_hydrogens  File 
"  File C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\addh\cmd.py""C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\addh\cmd.py, line "184, line  in 184hbond_add_hydrogens in 
hbond_add_hydrogens  File 
"  File C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\addh\cmd.py""C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\addh\cmd.py, line "77, line  in 77cmd_addh in 
cmd_addh  File 
"  File C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\coulombic\coulombic.py""C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\coulombic\coulombic.py", line 95 in assign_charges
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\coulombic\cmd.py", line 102 in cmd_coulombic
, line   File 95" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\commands\cli.pyassign_charges"
, line   File 3213" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\coulombic\cmd.pyrun"
  File , line "102C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\commands\run.py in "cmd_coulombic, line 
49  File  in "runC:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\commands\cli.py"
, line   File 3213" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.pyrun"
, line   File 536" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\commands\run.pyrun"
, line   File 49" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.pyrun"
, line   File 593" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.pyrun_expanded_command"
, line   File 536" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.pyrun"
, line   File 72" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.pyfunc_plus_tip"
, line   File 593" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.pyrun_expanded_command"
, line   File 339" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.pyrun"
, line   File 72" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.pyfunc_plus_tip"
, line   File 420" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.pyrun_shortcut"
, line   File 339" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.pyrun"
, line   File 402" in C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.pytry_shortcut"
, line 420  File  in "run_shortcutC:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.py
"  File , line "1386C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.py in "run_provider, line 
402  File  in "try_shortcutC:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\__init__.py
"  File , line "66C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\shortcuts.py in "run_provider, line 
1386  File  in "run_providerC:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\toolshed\__init__.py
"  File , line "1419C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\shortcuts\__init__.py in "run_provider, line 
66  File  in "run_providerC:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\toolshed\info.py
"  File , line 397 in "run_providerC:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\toolshed\__init__.py
"  File , line "1419C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\toolbar\tool.py in "run_provider, line 
215  File  in "callbackC:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\toolshed\info.py
"  File , line "397C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\ui\gui.py in "run_provider, line 
339  File  in "event_loopC:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\toolbar\tool.py
"  File , line "215C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py in "callback
  File "C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\ui\gui.py", line , line 1050339 in  in initevent_loop

  File   File ""C:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.pyC:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py"", line 1213 in 
  File , line "1050 in "init, line 
88  File  in "_run_codeC:\Program Files\ChimeraX 1.10.dev202501142332\bin\Lib\site-packages\chimerax\core\__main__.py
"  File , line "1213 in ", line 
198  File  in "_run_module_as_main
", line 88 in _run_code
  File "", line 198 in _run_module_as_main
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.10.dev202501142332 (2025-01-14)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 9UO2

9uo2 title:  
Cryo-EM structure of human organic solute transporter Ost-alpha/beta in apo
state [more info...]  
  
Chain information for 9uo2 #1  
---  
Chain | Description | UniProt  
A C | Organic solute transporter subunit alpha | OSTA_HUMAN 1-340  
B D | Organic solute transporter subunit beta | OSTB_HUMAN 1-128  
  
Non-standard residues in 9uo2 #1  
---  
76F —
(7E,21R,24S)-27-amino-24-hydroxy-18,24-dioxo-19,23,25-trioxa-24lambda~5~-phosphaheptacos-7-en-21-yl
(9Z,12E)-octadeca-9,12-dienoate (DOPE)  
CLR — cholesterol  
LPE — 1-O-octadecyl-Sn-glycero-3-phosphocholine (LPC-ether)  
NAG — 2-acetamido-2-deoxy-beta-D-glucopyranose (N-acetyl-beta-D-glucosamine;
2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE)  
P0E — phosphatidyl ethanol
((2S)-2-[(9E)-hexadec-9-enoyloxy]-3-{[hydroxy(2-hydroxyethoxy)phosphoryl]oxy}propyl
(9E)-octadec-9-enoate)  
PLM — palmitic acid  
  

> color #1 #688dd2ff

> color #1 #4a6596ff

> lighting simple

> lighting soft

> lighting full

> lighting flat

> lighting shadows true intensity 0.5

> graphics silhouettes false

> lighting simple

> lighting soft

> set bgColor white

> color bychain

> select /A

3241 atoms, 3339 bonds, 356 residues, 1 model selected  

> select clear

> show surfaces

> lighting soft

> lighting full

> lighting simple

> lighting shadows true

> lighting soft

> lighting shadows true intensity 0.5

> graphics silhouettes true

> lighting soft

> lighting shadows true intensity 0.5

> graphics silhouettes false

> lighting soft

> show target m

> select add #1

7322 atoms, 7546 bonds, 808 residues, 1 model selected  

> select subtract #1

4 models selected  

> hide #!1 models

> show #!1 models

> color #1 #4abc9aff

> color bychain

> coulombic

The following residues are missing heavy (non-hydrogen) atoms, which may
result in inaccurate electrostatics:  
/A GLU 2  
/A LYS 9  
/A ASP 208  
/A GLU 214  
/C GLU 2  
/C LYS 9  
/C ASP 208  
/C GLU 214  


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.10.dev202501142332 (2025-01-14)  
© 2016-2025 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 - Build 31.0.101.5522
OpenGL renderer: Intel(R) UHD Graphics
OpenGL vendor: Intel

Python: 3.11.4
Locale: en_IN.cp1252
Qt version: PyQt6 6.8.0, Qt 6.8.1
Qt runtime version: 6.8.1
Qt platform: windows

Manufacturer: LENOVO
Model: 82KA
OS: Microsoft Windows 11 Pro (Build 26200)
Memory: 4,084,523,008
MaxProcessMemory: 137,438,953,344
CPU: 4 11th Gen Intel(R) Core(TM) i3-1115G4 @ 3.00GHz
OSLanguage: en-GB

Installed Packages:
    alabaster: 1.0.0
    anyio: 4.8.0
    appdirs: 1.4.4
    asttokens: 3.0.0
    auditwheel: 6.2.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2024.12.14
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.1
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.2
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.60
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.2
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.8
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.10.dev202501142332
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.7
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.5.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NIHPresets: 1.2.8
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.7
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-ProfileGrids: 1.0.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.3
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.7
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.15
    ChimeraX-Shape: 1.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.19.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.43
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    comtypes: 1.4.5
    contourpy: 1.3.1
    coverage: 7.6.10
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.11
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    iniconfig: 2.0.0
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.5
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.8
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    OpenMM: 8.2.0
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pickleshare: 0.7.5
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    pluggy: 1.5.0
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.5
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.1
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.8.0
    PyQt6-Qt6: 6.8.1
    PyQt6-WebEngine-commercial: 6.8.0
    PyQt6-WebEngine-Qt6: 6.8.1
    PyQt6_sip: 13.9.1
    pytest: 8.3.4
    pytest-cov: 6.0.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pywin32: 306
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.1
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    sniffio: 1.3.1
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
    sphinx-autodoc-typehints: 2.2.3
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.3.0
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13
    WMI: 1.5.1