Opened 3 hours ago
Closed 46 minutes ago
#19929 closed defect (limitation)
Crash drawing ribbons
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Depiction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.26100
ChimeraX Version: 1.10.dev202501160116 (2025-01-16 01:16:53 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: access violation
Current thread 0x00003a90 (most recent call first):
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\atomic\ribbon.py", line 542 in vertex_normal_triangle_arrays
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\atomic\ribbon.py", line 210 in _make_ribbon_graphics
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\atomic\ribbon.py", line 630 in compute_ribbons
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\atomic\structure.py", line 673 in _create_ribbon_graphics
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\atomic\structure.py", line 363 in update_graphics_if_needed
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\atomic\structure.py", line 1906 in _update_graphics_if_needed
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\core\triggerset.py", line 149 in invoke
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\core\triggerset.py", line 248 in _activate
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\core\triggerset.py", line 217 in activate
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\core\triggerset.py", line 393 in activate_trigger
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\graphics\view.py", line 294 in check_for_drawing_change
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\core\updateloop.py", line 76 in draw_new_frame
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\core\updateloop.py", line 150 in _redraw_timer_callback
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\ui\gui.py", line 339 in event_loop
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\core\__main__.py", line 1050 in init
File "C:\Program Files\ChimeraX\ChimeraX 1.10.dev202501160116\bin\Lib\site-packages\chimerax\core\__main__.py", line 1213 in
File "", line 88 in _run_code
File "", line 198 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.10.dev202501160116 (2025-01-16)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:\Users\Carolina\OneDrive - Universidad Autonoma de San Luis Potosi -
> UASLP\Lab Virología\2026\Modelos en PDB\3j2w CHIKV.pdb1" format pdb
3j2w CHIKV.pdb1 title:
Electron cryo-microscopy of chikungunya virus [more info...]
Chain information for 3j2w CHIKV.pdb1
---
Chain | Description
1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A 1.11/A 1.12/A 1.13/A 1.14/A 1.15/A 1.16/A 1.17/A 1.18/A 1.19/A 1.20/A 1.21/A 1.22/A 1.23/A 1.24/A 1.25/A 1.26/A 1.27/A 1.28/A 1.29/A 1.30/A 1.31/A 1.32/A 1.33/A 1.34/A 1.35/A 1.36/A 1.37/A 1.38/A 1.39/A 1.40/A 1.41/A 1.42/A 1.43/A 1.44/A 1.45/A 1.46/A 1.47/A 1.48/A 1.49/A 1.50/A 1.51/A 1.52/A 1.53/A 1.54/A 1.55/A 1.56/A 1.57/A 1.58/A 1.59/A 1.60/A 1.1/B 1.2/B 1.3/B 1.4/B 1.5/B 1.6/B 1.7/B 1.8/B 1.9/B 1.10/B 1.11/B 1.12/B 1.13/B 1.14/B 1.15/B 1.16/B 1.17/B 1.18/B 1.19/B 1.20/B 1.21/B 1.22/B 1.23/B 1.24/B 1.25/B 1.26/B 1.27/B 1.28/B 1.29/B 1.30/B 1.31/B 1.32/B 1.33/B 1.34/B 1.35/B 1.36/B 1.37/B 1.38/B 1.39/B 1.40/B 1.41/B 1.42/B 1.43/B 1.44/B 1.45/B 1.46/B 1.47/B 1.48/B 1.49/B 1.50/B 1.51/B 1.52/B 1.53/B 1.54/B 1.55/B 1.56/B 1.57/B 1.58/B 1.59/B 1.60/B 1.1/C 1.2/C 1.3/C 1.4/C 1.5/C 1.6/C 1.7/C 1.8/C 1.9/C 1.10/C 1.11/C 1.12/C 1.13/C 1.14/C 1.15/C 1.16/C 1.17/C 1.18/C 1.19/C 1.20/C 1.21/C 1.22/C 1.23/C 1.24/C 1.25/C 1.26/C 1.27/C 1.28/C 1.29/C 1.30/C 1.31/C 1.32/C 1.33/C 1.34/C 1.35/C 1.36/C 1.37/C 1.38/C 1.39/C 1.40/C 1.41/C 1.42/C 1.43/C 1.44/C 1.45/C 1.46/C 1.47/C 1.48/C 1.49/C 1.50/C 1.51/C 1.52/C 1.53/C 1.54/C 1.55/C 1.56/C 1.57/C 1.58/C 1.59/C 1.60/C 1.1/D 1.2/D 1.3/D 1.4/D 1.5/D 1.6/D 1.7/D 1.8/D 1.9/D 1.10/D 1.11/D 1.12/D 1.13/D 1.14/D 1.15/D 1.16/D 1.17/D 1.18/D 1.19/D 1.20/D 1.21/D 1.22/D 1.23/D 1.24/D 1.25/D 1.26/D 1.27/D 1.28/D 1.29/D 1.30/D 1.31/D 1.32/D 1.33/D 1.34/D 1.35/D 1.36/D 1.37/D 1.38/D 1.39/D 1.40/D 1.41/D 1.42/D 1.43/D 1.44/D 1.45/D 1.46/D 1.47/D 1.48/D 1.49/D 1.50/D 1.51/D 1.52/D 1.53/D 1.54/D 1.55/D 1.56/D 1.57/D 1.58/D 1.59/D 1.60/D | No description available
1.1/E 1.2/E 1.3/E 1.4/E 1.5/E 1.6/E 1.7/E 1.8/E 1.9/E 1.10/E 1.11/E 1.12/E 1.13/E 1.14/E 1.15/E 1.16/E 1.17/E 1.18/E 1.19/E 1.20/E 1.21/E 1.22/E 1.23/E 1.24/E 1.25/E 1.26/E 1.27/E 1.28/E 1.29/E 1.30/E 1.31/E 1.32/E 1.33/E 1.34/E 1.35/E 1.36/E 1.37/E 1.38/E 1.39/E 1.40/E 1.41/E 1.42/E 1.43/E 1.44/E 1.45/E 1.46/E 1.47/E 1.48/E 1.49/E 1.50/E 1.51/E 1.52/E 1.53/E 1.54/E 1.55/E 1.56/E 1.57/E 1.58/E 1.59/E 1.60/E 1.1/F 1.2/F 1.3/F 1.4/F 1.5/F 1.6/F 1.7/F 1.8/F 1.9/F 1.10/F 1.11/F 1.12/F 1.13/F 1.14/F 1.15/F 1.16/F 1.17/F 1.18/F 1.19/F 1.20/F 1.21/F 1.22/F 1.23/F 1.24/F 1.25/F 1.26/F 1.27/F 1.28/F 1.29/F 1.30/F 1.31/F 1.32/F 1.33/F 1.34/F 1.35/F 1.36/F 1.37/F 1.38/F 1.39/F 1.40/F 1.41/F 1.42/F 1.43/F 1.44/F 1.45/F 1.46/F 1.47/F 1.48/F 1.49/F 1.50/F 1.51/F 1.52/F 1.53/F 1.54/F 1.55/F 1.56/F 1.57/F 1.58/F 1.59/F 1.60/F 1.1/G 1.2/G 1.3/G 1.4/G 1.5/G 1.6/G 1.7/G 1.8/G 1.9/G 1.10/G 1.11/G 1.12/G 1.13/G 1.14/G 1.15/G 1.16/G 1.17/G 1.18/G 1.19/G 1.20/G 1.21/G 1.22/G 1.23/G 1.24/G 1.25/G 1.26/G 1.27/G 1.28/G 1.29/G 1.30/G 1.31/G 1.32/G 1.33/G 1.34/G 1.35/G 1.36/G 1.37/G 1.38/G 1.39/G 1.40/G 1.41/G 1.42/G 1.43/G 1.44/G 1.45/G 1.46/G 1.47/G 1.48/G 1.49/G 1.50/G 1.51/G 1.52/G 1.53/G 1.54/G 1.55/G 1.56/G 1.57/G 1.58/G 1.59/G 1.60/G 1.1/H 1.2/H 1.3/H 1.4/H 1.5/H 1.6/H 1.7/H 1.8/H 1.9/H 1.10/H 1.11/H 1.12/H 1.13/H 1.14/H 1.15/H 1.16/H 1.17/H 1.18/H 1.19/H 1.20/H 1.21/H 1.22/H 1.23/H 1.24/H 1.25/H 1.26/H 1.27/H 1.28/H 1.29/H 1.30/H 1.31/H 1.32/H 1.33/H 1.34/H 1.35/H 1.36/H 1.37/H 1.38/H 1.39/H 1.40/H 1.41/H 1.42/H 1.43/H 1.44/H 1.45/H 1.46/H 1.47/H 1.48/H 1.49/H 1.50/H 1.51/H 1.52/H 1.53/H 1.54/H 1.55/H 1.56/H 1.57/H 1.58/H 1.59/H 1.60/H | No description available
1.1/I 1.2/I 1.3/I 1.4/I 1.5/I 1.6/I 1.7/I 1.8/I 1.9/I 1.10/I 1.11/I 1.12/I 1.13/I 1.14/I 1.15/I 1.16/I 1.17/I 1.18/I 1.19/I 1.20/I 1.21/I 1.22/I 1.23/I 1.24/I 1.25/I 1.26/I 1.27/I 1.28/I 1.29/I 1.30/I 1.31/I 1.32/I 1.33/I 1.34/I 1.35/I 1.36/I 1.37/I 1.38/I 1.39/I 1.40/I 1.41/I 1.42/I 1.43/I 1.44/I 1.45/I 1.46/I 1.47/I 1.48/I 1.49/I 1.50/I 1.51/I 1.52/I 1.53/I 1.54/I 1.55/I 1.56/I 1.57/I 1.58/I 1.59/I 1.60/I 1.1/J 1.2/J 1.3/J 1.4/J 1.5/J 1.6/J 1.7/J 1.8/J 1.9/J 1.10/J 1.11/J 1.12/J 1.13/J 1.14/J 1.15/J 1.16/J 1.17/J 1.18/J 1.19/J 1.20/J 1.21/J 1.22/J 1.23/J 1.24/J 1.25/J 1.26/J 1.27/J 1.28/J 1.29/J 1.30/J 1.31/J 1.32/J 1.33/J 1.34/J 1.35/J 1.36/J 1.37/J 1.38/J 1.39/J 1.40/J 1.41/J 1.42/J 1.43/J 1.44/J 1.45/J 1.46/J 1.47/J 1.48/J 1.49/J 1.50/J 1.51/J 1.52/J 1.53/J 1.54/J 1.55/J 1.56/J 1.57/J 1.58/J 1.59/J 1.60/J 1.1/K 1.2/K 1.3/K 1.4/K 1.5/K 1.6/K 1.7/K 1.8/K 1.9/K 1.10/K 1.11/K 1.12/K 1.13/K 1.14/K 1.15/K 1.16/K 1.17/K 1.18/K 1.19/K 1.20/K 1.21/K 1.22/K 1.23/K 1.24/K 1.25/K 1.26/K 1.27/K 1.28/K 1.29/K 1.30/K 1.31/K 1.32/K 1.33/K 1.34/K 1.35/K 1.36/K 1.37/K 1.38/K 1.39/K 1.40/K 1.41/K 1.42/K 1.43/K 1.44/K 1.45/K 1.46/K 1.47/K 1.48/K 1.49/K 1.50/K 1.51/K 1.52/K 1.53/K 1.54/K 1.55/K 1.56/K 1.57/K 1.58/K 1.59/K 1.60/K 1.1/L 1.2/L 1.3/L 1.4/L 1.5/L 1.6/L 1.7/L 1.8/L 1.9/L 1.10/L 1.11/L 1.12/L 1.13/L 1.14/L 1.15/L 1.16/L 1.17/L 1.18/L 1.19/L 1.20/L 1.21/L 1.22/L 1.23/L 1.24/L 1.25/L 1.26/L 1.27/L 1.28/L 1.29/L 1.30/L 1.31/L 1.32/L 1.33/L 1.34/L 1.35/L 1.36/L 1.37/L 1.38/L 1.39/L 1.40/L 1.41/L 1.42/L 1.43/L 1.44/L 1.45/L 1.46/L 1.47/L 1.48/L 1.49/L 1.50/L 1.51/L 1.52/L 1.53/L 1.54/L 1.55/L 1.56/L 1.57/L 1.58/L 1.59/L 1.60/L | No description available
1.1/M 1.2/M 1.3/M 1.4/M 1.5/M 1.6/M 1.7/M 1.8/M 1.9/M 1.10/M 1.11/M 1.12/M 1.13/M 1.14/M 1.15/M 1.16/M 1.17/M 1.18/M 1.19/M 1.20/M 1.21/M 1.22/M 1.23/M 1.24/M 1.25/M 1.26/M 1.27/M 1.28/M 1.29/M 1.30/M 1.31/M 1.32/M 1.33/M 1.34/M 1.35/M 1.36/M 1.37/M 1.38/M 1.39/M 1.40/M 1.41/M 1.42/M 1.43/M 1.44/M 1.45/M 1.46/M 1.47/M 1.48/M 1.49/M 1.50/M 1.51/M 1.52/M 1.53/M 1.54/M 1.55/M 1.56/M 1.57/M 1.58/M 1.59/M 1.60/M 1.1/N 1.2/N 1.3/N 1.4/N 1.5/N 1.6/N 1.7/N 1.8/N 1.9/N 1.10/N 1.11/N 1.12/N 1.13/N 1.14/N 1.15/N 1.16/N 1.17/N 1.18/N 1.19/N 1.20/N 1.21/N 1.22/N 1.23/N 1.24/N 1.25/N 1.26/N 1.27/N 1.28/N 1.29/N 1.30/N 1.31/N 1.32/N 1.33/N 1.34/N 1.35/N 1.36/N 1.37/N 1.38/N 1.39/N 1.40/N 1.41/N 1.42/N 1.43/N 1.44/N 1.45/N 1.46/N 1.47/N 1.48/N 1.49/N 1.50/N 1.51/N 1.52/N 1.53/N 1.54/N 1.55/N 1.56/N 1.57/N 1.58/N 1.59/N 1.60/N 1.1/O 1.2/O 1.3/O 1.4/O 1.5/O 1.6/O 1.7/O 1.8/O 1.9/O 1.10/O 1.11/O 1.12/O 1.13/O 1.14/O 1.15/O 1.16/O 1.17/O 1.18/O 1.19/O 1.20/O 1.21/O 1.22/O 1.23/O 1.24/O 1.25/O 1.26/O 1.27/O 1.28/O 1.29/O 1.30/O 1.31/O 1.32/O 1.33/O 1.34/O 1.35/O 1.36/O 1.37/O 1.38/O 1.39/O 1.40/O 1.41/O 1.42/O 1.43/O 1.44/O 1.45/O 1.46/O 1.47/O 1.48/O 1.49/O 1.50/O 1.51/O 1.52/O 1.53/O 1.54/O 1.55/O 1.56/O 1.57/O 1.58/O 1.59/O 1.60/O | No description available
1.1/P 1.2/P 1.3/P 1.4/P 1.5/P 1.6/P 1.7/P 1.8/P 1.9/P 1.10/P 1.11/P 1.12/P 1.13/P 1.14/P 1.15/P 1.16/P 1.17/P 1.18/P 1.19/P 1.20/P 1.21/P 1.22/P 1.23/P 1.24/P 1.25/P 1.26/P 1.27/P 1.28/P 1.29/P 1.30/P 1.31/P 1.32/P 1.33/P 1.34/P 1.35/P 1.36/P 1.37/P 1.38/P 1.39/P 1.40/P 1.41/P 1.42/P 1.43/P 1.44/P 1.45/P 1.46/P 1.47/P 1.48/P 1.49/P 1.50/P 1.51/P 1.52/P 1.53/P 1.54/P 1.55/P 1.56/P 1.57/P 1.58/P 1.59/P 1.60/P | No description available
1.1/Q 1.2/Q 1.3/Q 1.4/Q 1.5/Q 1.6/Q 1.7/Q 1.8/Q 1.9/Q 1.10/Q 1.11/Q 1.12/Q 1.13/Q 1.14/Q 1.15/Q 1.16/Q 1.17/Q 1.18/Q 1.19/Q 1.20/Q 1.21/Q 1.22/Q 1.23/Q 1.24/Q 1.25/Q 1.26/Q 1.27/Q 1.28/Q 1.29/Q 1.30/Q 1.31/Q 1.32/Q 1.33/Q 1.34/Q 1.35/Q 1.36/Q 1.37/Q 1.38/Q 1.39/Q 1.40/Q 1.41/Q 1.42/Q 1.43/Q 1.44/Q 1.45/Q 1.46/Q 1.47/Q 1.48/Q 1.49/Q 1.50/Q 1.51/Q 1.52/Q 1.53/Q 1.54/Q 1.55/Q 1.56/Q 1.57/Q 1.58/Q 1.59/Q 1.60/Q 1.1/R 1.2/R 1.3/R 1.4/R 1.5/R 1.6/R 1.7/R 1.8/R 1.9/R 1.10/R 1.11/R 1.12/R 1.13/R 1.14/R 1.15/R 1.16/R 1.17/R 1.18/R 1.19/R 1.20/R 1.21/R 1.22/R 1.23/R 1.24/R 1.25/R 1.26/R 1.27/R 1.28/R 1.29/R 1.30/R 1.31/R 1.32/R 1.33/R 1.34/R 1.35/R 1.36/R 1.37/R 1.38/R 1.39/R 1.40/R 1.41/R 1.42/R 1.43/R 1.44/R 1.45/R 1.46/R 1.47/R 1.48/R 1.49/R 1.50/R 1.51/R 1.52/R 1.53/R 1.54/R 1.55/R 1.56/R 1.57/R 1.58/R 1.59/R 1.60/R 1.1/S 1.2/S 1.3/S 1.4/S 1.5/S 1.6/S 1.7/S 1.8/S 1.9/S 1.10/S 1.11/S 1.12/S 1.13/S 1.14/S 1.15/S 1.16/S 1.17/S 1.18/S 1.19/S 1.20/S 1.21/S 1.22/S 1.23/S 1.24/S 1.25/S 1.26/S 1.27/S 1.28/S 1.29/S 1.30/S 1.31/S 1.32/S 1.33/S 1.34/S 1.35/S 1.36/S 1.37/S 1.38/S 1.39/S 1.40/S 1.41/S 1.42/S 1.43/S 1.44/S 1.45/S 1.46/S 1.47/S 1.48/S 1.49/S 1.50/S 1.51/S 1.52/S 1.53/S 1.54/S 1.55/S 1.56/S 1.57/S 1.58/S 1.59/S 1.60/S 1.1/T 1.2/T 1.3/T 1.4/T 1.5/T 1.6/T 1.7/T 1.8/T 1.9/T 1.10/T 1.11/T 1.12/T 1.13/T 1.14/T 1.15/T 1.16/T 1.17/T 1.18/T 1.19/T 1.20/T 1.21/T 1.22/T 1.23/T 1.24/T 1.25/T 1.26/T 1.27/T 1.28/T 1.29/T 1.30/T 1.31/T 1.32/T 1.33/T 1.34/T 1.35/T 1.36/T 1.37/T 1.38/T 1.39/T 1.40/T 1.41/T 1.42/T 1.43/T 1.44/T 1.45/T 1.46/T 1.47/T 1.48/T 1.49/T 1.50/T 1.51/T 1.52/T 1.53/T 1.54/T 1.55/T 1.56/T 1.57/T 1.58/T 1.59/T 1.60/T | No description available
> hide atoms
> set bgColor white
> cartoon
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.10.dev202501160116 (2025-01-16)
© 2016-2025 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 - Build 30.0.100.9864
OpenGL renderer: Intel(R) UHD Graphics 600
OpenGL vendor: Intel
Python: 3.11.4
Locale: es_MX.cp1252
Qt version: PyQt6 6.8.0, Qt 6.8.1
Qt runtime version: 6.8.1
Qt platform: windows
Manufacturer: ASUSTeK COMPUTER INC.
Model: VivoBook_ASUSLaptop E410MAB_R429MA
OS: Microsoft Windows 11 Home Single Language (Build 26100)
Memory: 4,109,217,792
MaxProcessMemory: 137,438,953,344
CPU: 2 Intel(R) Celeron(R) N4020 CPU @ 1.10GHz
OSLanguage: es-MX
Installed Packages:
alabaster: 1.0.0
anyio: 4.8.0
appdirs: 1.4.4
asttokens: 3.0.0
auditwheel: 6.2.0
babel: 2.16.0
beautifulsoup4: 4.12.3
blockdiag: 3.0.0
blosc2: 3.0.0
build: 1.2.1
certifi: 2024.12.14
cftime: 1.6.4.post1
charset-normalizer: 3.4.1
ChimeraX-AddCharge: 1.5.18
ChimeraX-AddH: 2.2.6
ChimeraX-AlignmentAlgorithms: 2.0.2
ChimeraX-AlignmentHdrs: 3.5
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.16.2
ChimeraX-AlphaFold: 1.0.1
ChimeraX-AltlocExplorer: 1.1.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.60
ChimeraX-AtomicLibrary: 14.1.11
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.4
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 3.0.0
ChimeraX-BondRot: 2.0.4
ChimeraX-BugReporter: 1.0.2
ChimeraX-BuildStructure: 2.13.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.4.0
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.4
ChimeraX-ChangeChains: 1.1
ChimeraX-CheckWaters: 1.4
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.3
ChimeraX-ColorActions: 1.0.5
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.8
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.10.dev202501160116
ChimeraX-CoreFormats: 1.2
ChimeraX-coulombic: 1.4.4
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2.7
ChimeraX-DistMonitor: 1.4.2
ChimeraX-DockPrep: 1.1.3
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.4.1
ChimeraX-Hbonds: 2.5
ChimeraX-Help: 1.3
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.3
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-IUPAC: 1.0
ChimeraX-KVFinder: 1.5.1
ChimeraX-Label: 1.1.14
ChimeraX-ListInfo: 1.2.2
ChimeraX-Log: 1.2
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.9.1
ChimeraX-Map: 1.3
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.1.6
ChimeraX-MCopy: 1.0
ChimeraX-MDcrds: 2.7.2
ChimeraX-MedicalToolbar: 1.1
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.14.2
ChimeraX-MMTF: 2.2
ChimeraX-ModelArchive: 1.0
ChimeraX-Modeller: 1.5.18
ChimeraX-ModelPanel: 1.5
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0.3
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-MutationScores: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.2
ChimeraX-NMRSTAR: 1.0.2
ChimeraX-NRRD: 1.2
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.14
ChimeraX-OrthoPick: 1.0.1
ChimeraX-PDB: 2.7.7
ChimeraX-PDBBio: 1.0.1
ChimeraX-PDBLibrary: 1.0.4
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1.2
ChimeraX-ProfileGrids: 1.0.1
ChimeraX-PubChem: 2.2
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.2
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.6.3
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.3.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 4.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.2
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-Segmentations: 3.5.7
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.15
ChimeraX-Shape: 1.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.2.0
ChimeraX-ShowSequences: 1.0.3
ChimeraX-SideView: 1.0.1
ChimeraX-SimilarStructures: 1.0.1
ChimeraX-Smiles: 2.1.2
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.19.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.2.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.5.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-TaskManager: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.2.3
ChimeraX-ToolshedUtils: 1.2.4
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.43
ChimeraX-Umap: 1.0
ChimeraX-uniprot: 2.3.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.4.4
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-vrml: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.4
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.2.2
comtypes: 1.4.5
contourpy: 1.3.1
coverage: 7.6.10
cxservices: 1.2.3
cycler: 0.12.1
Cython: 3.0.10
debugpy: 1.8.11
decorator: 5.1.1
docutils: 0.21.2
executing: 2.1.0
filelock: 3.15.4
fonttools: 4.55.3
funcparserlib: 2.0.0a0
glfw: 2.8.0
grako: 3.16.5
h11: 0.14.0
h5py: 3.12.1
html2text: 2024.2.26
httpcore: 1.0.7
httpx: 0.28.1
idna: 3.10
ihm: 1.3
imagecodecs: 2024.6.1
imagesize: 1.4.1
iniconfig: 2.0.0
ipykernel: 6.29.5
ipython: 8.26.0
ipywidgets: 8.1.5
jedi: 0.19.1
Jinja2: 3.1.5
jupyter_client: 8.6.2
jupyter_core: 5.7.2
jupyterlab_widgets: 3.0.13
kiwisolver: 1.4.8
line_profiler: 4.1.3
lxml: 5.2.2
lz4: 4.3.3
MarkupSafe: 3.0.2
matplotlib: 3.9.2
matplotlib-inline: 0.1.7
msgpack: 1.0.8
ndindex: 1.9.2
nest-asyncio: 1.6.0
netCDF4: 1.6.5
networkx: 3.3
nibabel: 5.2.0
nptyping: 2.5.0
numexpr: 2.10.2
numpy: 1.26.4
OpenMM: 8.2.0
openvr: 1.26.701
packaging: 23.2
ParmEd: 4.2.2
parso: 0.8.4
pep517: 0.13.1
pickleshare: 0.7.5
pillow: 10.4.0
pip: 24.2
pkginfo: 1.11.1
platformdirs: 4.3.6
pluggy: 1.5.0
prompt_toolkit: 3.0.48
psutil: 6.0.0
pure_eval: 0.2.3
py-cpuinfo: 9.0.0
pycollada: 0.8
pydicom: 2.4.4
pyelftools: 0.31
Pygments: 2.18.0
pynmrstar: 3.3.5
pynrrd: 1.0.0
PyOpenGL: 3.1.7
PyOpenGL-accelerate: 3.1.7
pyopenxr: 1.0.3401
pyparsing: 3.2.1
pyproject_hooks: 1.2.0
PyQt6-commercial: 6.8.0
PyQt6-Qt6: 6.8.1
PyQt6-WebEngine-commercial: 6.8.0
PyQt6-WebEngine-Qt6: 6.8.1
PyQt6_sip: 13.9.1
pytest: 8.3.4
pytest-cov: 6.0.0
python-dateutil: 2.9.0.post0
pytz: 2024.2
pywin32: 306
pyzmq: 26.2.0
qtconsole: 5.5.2
QtPy: 2.4.2
qtshim: 1.1
RandomWords: 0.4.0
requests: 2.32.3
scipy: 1.14.0
setuptools: 72.1.0
sfftk-rw: 0.8.1
six: 1.16.0
sniffio: 1.3.1
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.6
Sphinx: 8.0.2
sphinx-autodoc-typehints: 2.2.3
sphinxcontrib-applehelp: 2.0.0
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 2.0.0
sphinxcontrib-htmlhelp: 2.1.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 2.0.0
sphinxcontrib-serializinghtml: 2.0.0
stack-data: 0.6.3
superqt: 0.6.3
tables: 3.10.1
tcia_utils: 1.5.1
tifffile: 2024.7.24
tinyarray: 1.2.4
tornado: 6.4.2
traitlets: 5.14.3
typing_extensions: 4.12.2
tzdata: 2024.2
urllib3: 2.3.0
wcwidth: 0.2.13
webcolors: 24.6.0
wheel: 0.43.0
wheel-filename: 1.4.1
widgetsnbextension: 4.0.13
WMI: 1.5.1
Change History (2)
comment:1 by , 3 hours ago
| Component: | Unassigned → Depiction |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash drawing ribbons |
comment:2 by , 46 minutes ago
| Resolution: | → limitation |
|---|---|
| Status: | assigned → closed |
ChimeraX crashed showing ribbons for a large structure of over 3000 chains. The problem is almost certainly that it ran out of memory. Your computer only has 4 Gbytes of memory, which is too little to handle large structures in ChimeraX. I recommend at least 16 GB of memory for structures of this size.
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Reported by Carolina Piña