![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Dec 17, 2025: Today
- 9:40 AM Ticket #19522 (Problem downloading ChimeraX) closed by
- fixed: Hi Mattias, Thanks for reporting this problem. We had a problem with …
- 9:34 AM Ticket #19521 (alignment widget not properly destroying when tool closed) closed by
- duplicate: Duplicate of #18702
- 9:31 AM Ticket #19520 (Regarding Internal Server Error while Downloading Chimera X) closed by
- fixed: Hi Piyush, Thanks for reporting this problem. We have fixed it now …
- 8:29 AM Ticket #19523 (Looking Glass support) created by
- […]
- 2:39 AM Ticket #19522 (Problem downloading ChimeraX) created by
- […] Screenshot 2025-12-17 113230.png
- 1:02 AM Ticket #19521 (alignment widget not properly destroying when tool closed) created by
- […]
Dec 16, 2025: Yesterday
- 10:00 PM Ticket #19520 (Regarding Internal Server Error while Downloading Chimera X) created by
- […]
- 5:54 PM ChangeLog edited by
- (diff)
- 4:56 PM Ticket #19373 (Out of memory converting Gromacs list of numpy coords to 2D numpy array) closed by
- fixed: The xdrfile library does not offer a way to determine the number of …
- 4:46 PM Ticket #19519 (Extensible mmCIF table reading) created by
- It would be nice if the mmCIF module supported a simple …
- 10:24 AM Dev2025-12-22 created by
- 10:22 AM 2025-12-18 created by
- 10:21 AM DeveloperMeetings edited by
- (diff)
- 12:00 AM Ticket #19518 (SEQCROW: reading .fchk: all_geom is None) created by
- […]
Dec 15, 2025:
- 3:59 PM DeveloperMeetings edited by
- (diff)
- 3:58 PM Dev2025-12-15 edited by
- (diff)
- 11:51 AM Ticket #19233 (List index out of range opening UniProt entry) closed by
- worksforme: Must have been a problem in the UniProt database entry itself. The …
- 10:57 AM Ticket #19516 (Crash during window geometry change in QDockWidget::event()) closed by
- duplicate: Qt bug. No Python traceback or ChimeraX Log.
- 10:46 AM Ticket #19517 (Non-ASCII character in Modeller key) closed by
- nonchimerax
- 10:32 AM Ticket #19514 (Segmentations: chimerax misspelled in import statement) closed by
- duplicate
- 8:59 AM ChangeLog edited by
- (diff)
- 2:03 AM Ticket #19517 (Non-ASCII character in Modeller key) created by
- […]
Dec 14, 2025:
Dec 12, 2025:
- 6:33 PM Ticket #19515 (Allow ChimeraX to use a boltz prediction server) created by
- Would like to allow ChimeraX to send prediction input files to a …
- 3:01 PM Ticket #19514 (Segmentations: chimerax misspelled in import statement) created by
- […]
- 10:41 AM Ticket #19440 ('invert' option of 'volume zone' requires 'newMap true') closed by
- worksforme: The surface zone/invert plan seems to work fine.
- 10:03 AM Ticket #19512 (VR on Linux) closed by
- limitation: Hi Kyrylo, I don't think I have good news for you. I'd guess 99% …
- 9:56 AM Ticket #19513 (Crash on Linux) closed by
- limitation: If you can reproduce this, install gdb if it isn't already installed, …
Dec 11, 2025:
- 7:16 PM ChangeLog edited by
- (diff)
- 7:15 PM ChangeLog edited by
- (diff)
- 5:45 PM ChangeLog edited by
- (diff)
- 4:52 PM Ticket #19478 (Crash finding H-bonds) closed by
- can't reproduce: The file also works on a Windows 10 machine in my lab with both the …
- 4:30 PM Ticket #19438 (Render by Attr select histogram: cannot subtract numpy booleans) closed by
- can't reproduce
- 3:29 PM 2025-12-11 edited by
- (diff)
- 2:57 PM Ticket #19508 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) closed by
- duplicate: Reported many times, always macOS 26. Probable Qt bug. Don't think …
- 2:10 PM Ticket #19513 (Crash on Linux) created by
- […]
- 12:48 PM Ticket #19512 (VR on Linux) created by
- […]
- 10:25 AM Ticket #19510 (Crash during window geometry change in QDockWidget::event()) closed by
- can't reproduce
- 6:34 AM Ticket #19511 (glClear: invalid framebuffer operation) created by
- […]
- 4:21 AM Ticket #19510 (Crash during window geometry change in QDockWidget::event()) created by
- […]
- 3:09 AM Ticket #19509 (Bug report with Chop^ChopMF) created by
- […]
Dec 10, 2025:
- 6:14 PM Ticket #19295 (Find Cavities suggestions) closed by
- fixed: Available in tomorrow's daily build
- 5:29 PM DeveloperMeetings edited by
- (diff)
- 5:29 PM 2025-12-11 edited by
- (diff)
- 3:37 PM Ticket #19508 (Crash on Mac waking from sleep in OpenGL swap_buffers on status line ...) created by
- […]
- 10:32 AM Ticket #19507 (Profile Grid: wrapped C/C++ object of type QGraphicsView has been deleted) closed by
- fixed: Fix: …
- 10:14 AM Ticket #19504 (Crash during window geometry change in QDockWidget::event()) closed by
- can't reproduce: macOS 26.1, with an external display. Probable Qt bug.
- 10:02 AM Ticket #19506 (Crash destroying structure) closed by
- can't reproduce: Weird that there's two back-to-back …
- 9:56 AM Ticket #19507 (Profile Grid: wrapped C/C++ object of type QGraphicsView has been deleted) created by
- […] PF00103full-4K.sto
- 9:31 AM Ticket #19505 (Memory allocation failure running DSSP) closed by
- limitation: Was running it on a virus capsid
- 9:22 AM Ticket #19503 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Máté, Thanks for reporting this problem. It is fixed in the …
- 7:25 AM Ticket #19506 (Crash destroying structure) created by
- […]
- 6:20 AM Ticket #19505 (Memory allocation failure running DSSP) created by
- […]
- 12:29 AM Ticket #19504 (Crash during window geometry change in QDockWidget::event()) created by
- […]
- 12:24 AM Ticket #19503 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Dec 9, 2025:
- 5:33 PM Ticket #19400 (Have Render By Attribute externally controllable) closed by
- fixed: The Render/Select By Attribute tool now has a configure() method. I …
- 10:59 AM Ticket #19501 (Mac AMD graphics driver crash, Radeon Pro 560, macOS 13.7.8) closed by
- nonchimerax: Duplicate of #19500, Apple AMD graphics driver crash.
- 10:57 AM Ticket #19500 (Mac AMD graphics driver crash, Radeon Pro 560, macOS 13.7.8) closed by
- nonchimerax: Apple AMD graphics driver crash.
- 10:54 AM Dev2025-12-15 created by
- 10:53 AM DeveloperMeetings edited by
- (diff)
- 10:52 AM 2025-12-11 created by
- 10:51 AM 2025-12-4 edited by
- (diff)
- 10:51 AM DeveloperMeetings edited by
- (diff)
- 9:32 AM Ticket #19502 (Crash using open/save dialog) closed by
- can't reproduce
- 8:11 AM Ticket #19502 (Crash using open/save dialog) created by
- […]
Dec 8, 2025:
- 11:00 PM Ticket #19501 (Mac AMD graphics driver crash, Radeon Pro 560, macOS 13.7.8) created by
- […]
- 10:55 PM Ticket #19500 (Mac AMD graphics driver crash, Radeon Pro 560, macOS 13.7.8) created by
- […]
- 6:48 PM Ticket #19499 (Boltz not installing CUDA version of torch on Windows) closed by
- fixed: Fixed. I updated the ChimeraX code (daily build and release …
- 5:58 PM Ticket #19499 (Boltz not installing CUDA version of torch on Windows) created by
- […]
- 3:55 PM Dev2025-12-8 edited by
- (diff)
- 1:22 PM Ticket #19488 (Crash in mmCIF / connect_structure) closed by
- duplicate
- 1:20 PM Ticket #19487 (Crash in mmCIF / connect_structure) closed by
- can't reproduce: Can't reproduce without the structure, and now moot anyway since mmCIF …
- 1:18 PM Ticket #19486 (Crash deleting atoms) closed by
- duplicate: Hi Bruce, Thanks for reporting this problem. It was fixed on October …
- 1:12 PM Ticket #19485 (Crash in python_instances_of_class) closed by
- duplicate: Hi Hanieh, Thanks for reporting this problem. It is fixed in later …
- 1:06 PM Ticket #19484 (Crash in event loop) closed by
- can't reproduce
- 11:58 AM Ticket #19498 (SEQCROW: IR Spectrum: could not convert string to float64) created by
- […]
Dec 7, 2025:
- 4:27 AM Ticket #19488 (Crash in mmCIF / connect_structure) created by
- […]
- 4:26 AM Ticket #19487 (Crash in mmCIF / connect_structure) created by
- […]
Dec 6, 2025:
- 8:42 PM Ticket #19486 (Crash deleting atoms) created by
- […]
- 6:56 PM Ticket #19485 (Crash in python_instances_of_class) created by
- […]
- 3:28 PM Ticket #19484 (Crash in event loop) created by
- […]
Dec 5, 2025:
- 4:11 PM 2025-12-4 edited by
- (diff)
- 12:07 PM Ticket #19483 ("Boltz requires newer Torch versions that are not available on Intel ...) closed by
- fixed: Fixed. Sorry about that. I have fixed the problem in the ChimeraX …
- 10:49 AM Ticket #19483 ("Boltz requires newer Torch versions that are not available on Intel ...) created by
- […]
- 10:41 AM Ticket #19482 (MemoryError saving session with maps) closed by
- limitation: The error means ChimeraX ran out of memory trying to save a session …
- 5:42 AM Ticket #19482 (MemoryError saving session with maps) created by
- […]
Dec 4, 2025:
- 4:46 PM PrivacyAndSecurity edited by
- A little wordsmithing and typo corrections. (diff)
- 3:25 PM Ticket #19481 (Crash using open/save dialog) closed by
- can't reproduce
- 10:24 AM Ticket #19476 (Crash in Qt 6.9 event loop processing geometry change, QDockWidget.event()) closed by
- can't reproduce: Probably Qt bug. In QDockWidget::event().
- 10:24 AM Ticket #19479 (Save command history: Permission Denied) closed by
- can't reproduce: After hundreds of other commands saved, just started denying …
- 10:21 AM Ticket #19481 (Crash using open/save dialog) created by
- […]
- 10:21 AM Ticket #19475 (Crash in swap_buffers exposing status line during Mac wakeup) closed by
- duplicate: Duplicate of #19474.
- 10:20 AM Ticket #19474 (Crash in swap_buffers exposing status line during Mac wakeup) closed by
- duplicate: Qt 6.8 in QOpenGLContext.makeCurrent() for Side View dispatched an …
- 10:00 AM Ticket #19480 (Hydrogen naming inconsistent) created by
- […] AF3_crd-dimer_rank0_addH.pdb
- 8:33 AM Ticket #19479 (Save command history: Permission Denied) created by
- […]
- 1:11 AM Ticket #19478 (Crash finding H-bonds) created by
- […]
Dec 3, 2025:
- 11:46 PM Ticket #18689 (Volume 'session' attribute is None, Segmentations tool) closed by
- fixed: This state should be impossible to get into now. I removed the 'minus' …
- 4:29 PM Ticket #19477 (Improvements to mcp_server bundle that allows Claude AI agent to ...) created by
- This ticket is to make miscellaneous usability improvements to the …
- 4:06 PM Ticket #19476 (Crash in Qt 6.9 event loop processing geometry change, QDockWidget.event()) created by
- […]
- 3:57 PM Ticket #19475 (Crash in swap_buffers exposing status line during Mac wakeup) created by
- […]
- 2:08 PM Ticket #19445 (Web service → ProtocolError) closed by
- fixed: We now catch ProtocolError in the try...catch that guards that block …
- 11:22 AM Ticket #19474 (Crash in swap_buffers exposing status line during Mac wakeup) created by
- […]
- 10:19 AM Ticket #19470 (Crash on Mac waking from sleep) closed by
- duplicate: The ChimeraX bug report panel said what we know about this crash: …
- 9:55 AM Ticket #19472 (Incorrect .gro file) closed by
- not a bug: .gro file was missing second line (number of atoms)
- 9:30 AM Ticket #19471 (Crash using open/save dialog) closed by
- can't reproduce
- 4:49 AM Ticket #19473 (SEQCROW: read ORCA: shapes not aligned) created by
- […]
Dec 2, 2025:
- 7:31 PM Ticket #19472 (Incorrect .gro file) created by
- […]
- 5:07 PM Ticket #19471 (Crash using open/save dialog) created by
- […]
- 4:36 PM Ticket #19241 (MemoryError importing bundles during startup custom initialization) closed by
- can't reproduce: Not sure how this happened.
- 4:19 PM Ticket #19469 (ChimeraX bug report: black display on Linux) closed by
- fixed: Newer version of ChimeraX (and thus a newer version of Qt User …
- 4:05 PM Ticket #19470 (Crash on Mac waking from sleep) created by
- […]
- 1:06 PM PrivacyAndSecurity edited by
- (diff)
- 12:05 PM Ticket #19468 (alphafold search: 'AtomicStructure' object has no attribute ...) closed by
- wontfix: The command "alphafold predict #1/A" appears to have produced a …
- 11:06 AM Dev2025-12-8 created by
- 11:05 AM DeveloperMeetings edited by
- (diff)
- 11:01 AM Ticket #19463 (Crash in swap_buffers waking from sleep on Mac) closed by
- duplicate: Python traceback shows it is in expose event drawing status line …
- 10:38 AM ChangeLog edited by
- (diff)
- 9:53 AM Ticket #19469 (ChimeraX bug report: black display on Linux) created by
- […] 948e8a41-d879-48de-9c8a-6e5dec028dcc.png
- 9:30 AM Ticket #19468 (alphafold search: 'AtomicStructure' object has no attribute ...) created by
- […]
- 8:59 AM Ticket #19467 (SEQCROW: 'ArtistList' object has no attribute 'remove') created by
- […]
- 3:08 AM Ticket #19466 (ISOLDE: problems refining UTP and CTP) created by
- […]
- 1:51 AM Ticket #19465 (Crash closing tool) created by
- […]
- 1:13 AM Ticket #19464 (Fw: Problem opening local small-molecule CIF file) created by
- […]
Dec 1, 2025:
- 9:55 PM Ticket #19463 (Crash in swap_buffers waking from sleep on Mac) created by
- […]
- 7:50 PM Ticket #19462 (Find Cavities not disposing of deleted structures) created by
- […]
- 7:12 PM PrivacyAndSecurity edited by
- (diff)
- 6:44 PM PrivacyAndSecurity created by
- 5:41 PM WikiStart edited by
- (diff)
- 5:31 PM Ticket #19453 (MemoryError saving session) closed by
- fixed: I added an error message when saving a session file gets out of memory …
- 4:28 PM Ticket #19446 (alphafold contacts: atom KeyError) closed by
- can't reproduce: I tested a boltz 2 prediction of phosphorylated 9gi8 homodimer and …
- 4:14 PM Ticket #19458 (glClear: invalid framebuffer operation) closed by
- duplicate: glClear() error in status line on expose event. External Dell …
- 3:55 PM DeveloperMeetings edited by
- (diff)
- 3:54 PM Dev2025-12-1 edited by
- (diff)
- 3:00 PM Ticket #19461 (Crash deleting atoms/bonds) closed by
- worksforme
- 3:00 PM Ticket #19461 (Crash deleting atoms/bonds) reopened by
- 3:00 PM Ticket #19461 (Crash deleting atoms/bonds) closed by
- can't reproduce: The same structures/commands worked for me.
- 2:48 PM Ticket #19460 (H-Bonds: More than 2 coplanar positions specified) closed by
- can't reproduce: Hi Shabir, We don't really have the capability to diagnose problems …
- 2:41 PM Ticket #19459 (Crash in event loop) closed by
- can't reproduce
- 1:59 PM Ticket #19455 (MemoryError saving session including maps) closed by
- can't reproduce: It doesn't look like you have large maps or atomic models open in …
- 1:28 PM Ticket #19444 (Log blank) closed by
- nonchimerax: If you mean the Log panel of ChimeraX is blank, that indicates a …
- 1:24 PM Ticket #19442 (Crash in glBufferSubData changing volume level) closed by
- duplicate: Duplicate of #19441
- 1:23 PM Ticket #19441 (Crash in glBufferSubData changing volume level) closed by
- limitation: Mac M3 OpenGL graphics driver crash. Had 5 1024 x 1024 x 375 int8 …
- 12:03 PM Ticket #19457 (Crash deallocating UserError traceback stack) closed by
- can't reproduce
- 12:00 PM Ticket #19456 (MemoryError saving session including maps) closed by
- duplicate
- 11:53 AM Ticket #19451 (mshMIGPerform crash in NSAccessiblity native Mac APIs) closed by
- duplicate
- 11:50 AM Ticket #19450 (Crash using open/save dialog) closed by
- can't reproduce
- 11:43 AM Ticket #19449 (KVFinder on old MacOS) closed by
- limitation
- 11:20 AM Ticket #19443 (Crash in connect_structure while opening mmCIF) closed by
- can't reproduce: I don't see the problematic "open" command in the log. Possibly it's …
- 10:25 AM Ticket #19292 (Text entry area nearly invisible in dark mode) closed by
- fixed: Fixed in the current release candidate and in the next daily build. …
- 10:01 AM Dev2025-12-1 edited by
- (diff)
- 8:34 AM Ticket #19461 (Crash deleting atoms/bonds) created by
- […]
- 7:28 AM Ticket #19460 (H-Bonds: More than 2 coplanar positions specified) created by
- […]
- 6:36 AM Ticket #19459 (Crash in event loop) created by
- […]
- 3:15 AM Ticket #19458 (glClear: invalid framebuffer operation) created by
- […]
- 2:24 AM Ticket #19457 (Crash deallocating UserError traceback stack) created by
- […]
Nov 30, 2025:
- 8:05 PM Ticket #19456 (MemoryError saving session including maps) created by
- […]
- 8:04 PM Ticket #19455 (MemoryError saving session including maps) created by
- […]
- 7:25 AM Ticket #19454 (XMAS: find shortest: problem generating CSV/TSV file) created by
- […]
- 2:34 AM Ticket #19453 (MemoryError saving session) created by
- […]
- 1:35 AM Ticket #19452 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
- 1:30 AM Ticket #19451 (mshMIGPerform crash in NSAccessiblity native Mac APIs) created by
- […]
Nov 29, 2025:
Nov 28, 2025:
- 8:48 PM Ticket #19449 (KVFinder on old MacOS) created by
- […]
- 5:36 PM Ticket #19448 (Supported coordinate set looping) created by
- […]
- 9:05 AM Ticket #19447 (Private SMILES fetching) created by
- […] chimerax_openbabel-0.1-py3-none-any.whl
Nov 27, 2025:
- 11:45 PM Ticket #19446 (alphafold contacts: atom KeyError) created by
- […]
- 9:41 AM Ticket #19445 (Web service → ProtocolError) created by
- […]
- 5:30 AM Ticket #19444 (Log blank) created by
- […]
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