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Citations (partial list)

Using molecular visualization to explore protein structure and function and enhance student facility with computational tools. Terrell CR, Listenberger LL. Biochem Mol Biol Educ. 2017 Jul 8;45(4):318-328.

Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1. Li Z, Han K et al. Nat Chem Biol. 2017 Jul;13(7):757-763.

Dual host specificity of phage SP6 is facilitated by tailspike rotation. Tu J, Park T et al. Virology. 2017 Jul;507:206-215.

Improved metrics for comparing structures of macromolecular assemblies determined by 3D electron-microscopy. Joseph AP, Lagerstedt I et al. J Struct Biol. 2017 Jul;199(1):12-26.

Atomic structure of the human cytomegalovirus capsid with its securing tegument layer of pp150. Yu X, Jih J et al. Science. 2017 Jun 30;356(6345):eaam6892.

Structure and conformational dynamics of scaffolded DNA origami nanoparticles. Pan K, Bricker WP et al. Nucleic Acids Res. 2017 Jun 20;45(11):6284-6298.

Structural mechanism of ATP-independent transcription initiation by RNA polymerase I. Han Y, Yan C et al. eLife. 2017 Jun 17;6. pii: e27414.

Effects of myosin variants on interacting-heads motif explain distinct hypertrophic and dilated cardiomyopathy phenotypes. Alamo L, Ware JS et al. eLife. 2017 Jun 13;6. pii: e24634.

Cryo-EM structure of the activated GLP-1 receptor in complex with a G protein. Zhang Y, Sun B et al. Nature. 2017 Jun 8;546(7657):248-253.

The CaMKII holoenzyme structure in activation-competent conformations. Myers JB, Zaegel V et al. Nat Commun. 2017 Jun 7;8:15742.

Structural basis for antibody-mediated neutralization of Lassa virus. Hastie KM, Zandonatti MA et al. Science. 2017 Jun 2;356(6341):923-928.

Cryo-electron microscopy of chromatin biology. Wilson MD, Costa A. Acta Crystallogr D Struct Biol. 2017 Jun 1;73(Pt 6):541-548.

Halogenated ether, alcohol, and alkane anesthetics activate TASK-3 tandem pore potassium channels likely through a common mechanism. Luethy A, Boghosian JD et al. Mol Pharmacol. 2017 Jun;91(6):620-629.

Phase-plate cryo-EM structure of a class B GPCR-G-protein complex. Liang YL, Khoshouei M et al. Nature. 2017 Jun 1;546(7656):118-123.

Large-scale analysis of hydrogen bond interaction patterns in protein-ligand interfaces. Nittinger E, Inhester T et al. J Med Chem. 2017 May 25;60(10):4245-4257.

ArbAlign: A tool for optimal alignment of arbitrarily ordered isomers using the Kuhn-Munkres algorithm. Temelso B, Mabey JM et al. J Chem Inf Model. 2017 May 22;57(5):1045-1054.

Cryo-EM structure of human adenovirus D26 reveals the conservation of structural organization among human adenoviruses. Yu X, Veesler D et al. Sci Adv. 2017 May 10;3(5):e1602670.

Relation between molecular electronic structure and nuclear spin-induced circular dichroism. Štěpánek P, Coriani S et al. Sci Rep. 2017 Apr 24;7:46617.

Architecture of a transcribing-translating expressome. Kohler R, Mooney RA et al. Science. 2017 Apr 14;356(6334):194-197.

Mediator structure and rearrangements required for holoenzyme formation. Tsai KL, Yu X et al. Nature. 2017 Apr 13;544(7649):196-201.

PLP and GABA trigger GabR-mediated transcription regulation in Bacillus subtilis via external aldimine formation. Wu R, Sanishvili R et al. Proc Natl Acad Sci USA. 2017 Apr 11;114(15):3891-3896.

Structure of the Ebola virus glycoprotein spike within the virion envelope at 11 Å resolution. Beniac DR, Booth TF. Sci Rep. 2017 Apr 11;7:46374.

Structural basis of protein translocation by the Vps4-Vta1 AAA ATPase. Monroe N, Han H et al. eLife. 2017 Apr 5;6. pii: e24487.

Structural, functional, and clinical characterization of a novel PTPN11 mutation cluster underlying Noonan syndrome. Pannone L, Bocchinfuso G et al. Hum Mutat. 2017 Apr;38(4):451-459.

Self-assembly of genetically encoded DNA-protein hybrid nanoscale shapes. Praetorius F, Dietz H. Science. 2017 Mar 24;355(6331).

Accurate model annotation of a near-atomic resolution cryo-EM map. Hryc CF, Chen DH et al. Proc Natl Acad Sci USA. 2017 Mar 21;114(12):3103-3108.

Structural basis of the day-night transition in a bacterial circadian clock. Tseng R, Goularte NF et al. Science. 2017 Mar 17;355(6330):1174-1180.

Structures of the cyanobacterial circadian oscillator frozen in a fully assembled state. Snijder J, Schuller JM et al. Science. 2017 Mar 17;355(6330):1181-1184.

3D printing of biomolecular models for research and pedagogy. Da Veiga Beltrame E, Tyrwhitt-Drake J et al. J Vis Exp. 2017 Mar 13;(121).

Double-stranded RNA virus outer shell assembly by bona fide domain-swapping. Sun Z, El Omari K et al. Nat Commun. 2017 Mar 13;8:14814.

Molecular architecture of the major membrane ring component of the nuclear pore complex. Upla P, Kim SJ et al. Structure. 2017 Mar 7;25(3):434-445.

Self-assembly of nanoparticles into biomimetic capsid-like nanoshells. Yang M, Chan H et al. Nat Chem. 2017 Mar;9(3):287-294.

The cytotoxic Staphylococcus aureus PSMα3 reveals a cross-α amyloid-like fibril. Tayeb-Fligelman E, Tabachnikov O et al. Science. 2017 Feb 24;355(6327):831-833.

Differential contribution of transmembrane domains IV, V, VI, and VII to human angiotensin II type 1 receptor homomer formation. Young BM, Nguyen E et al. J Biol Chem. 2017 Feb 24;292(8):3341-3350.

Structure of a LOV protein in apo-state and implications for construction of LOV-based optical tools. Arinkin V, Granzin J et al. Sci Rep. 2017 Feb 17;7:42971.

Mutations in ATP6V1E1 or ATP6V1A cause autosomal-recessive cutis laxa. Van Damme T, Gardeitchik T et al. Am J Hum Genet. 2017 Feb 2;100(2):216-227.

Molecular insights into lipid-assisted Ca2+ regulation of the TRP channel Polycystin-2. Wilkes M, Madej MG et al. Nat Struct Mol Biol. 2017 Feb;24(2):123-130.

Architecture of the yeast Elongator complex. Dauden MI, Kosinski J et al. EMBO Rep. 2017 Feb;18(2):264-279.

Structure of the immature Zika virus at 9 Å resolution. Prasad VM, Miller AS et al. Nat Struct Mol Biol. 2017 Feb;24(2):184-186.

Hydrogen positions in single nanocrystals revealed by electron diffraction. Palatinus L, Brázda P et al. Science. 2017 Jan 13;355(6321):166-169.

Architecture of the yeast small subunit processome. Chaker-Margot M, Barandun J et al. Science. 2017 Jan 13;355(6321):aal1880.

Principles for designing proteins with cavities formed by curved β sheets. Marcos E, Basanta B et al. Science. 2017 Jan 13;355(6321):201-206.

Structure of actomyosin rigour complex at 5.2 Å resolution and insights into the ATPase cycle mechanism. Fujii T, Namba K. Nat Commun. 2017 Jan 9;8:13969.

Cryo-EM structures and atomic model of the HIV-1 strand transfer complex intasome. Passos DO, Li M et al. Science. 2017 Jan 6;355(6320):89-92.

A supramolecular assembly mediates lentiviral DNA integration. Ballandras-Colas A, Maskell DP et al. Science. 2017 Jan 6;355(6320):93-95.

Cryo-EM structure of the open high-conductance Ca2+-activated K+ channel. Tao X, Hite RK, MacKinnon R. Nature. 2017 Jan 5;541(7635):46-51.

In situ structures of the genome and genome-delivery apparatus in a single-stranded RNA virus. Dai X, Li Z et al. Nature. 2017 Jan 5;541(7635):112-116.

The structure and flexibility of conical HIV-1 capsids determined within intact virions. Mattei S, Glass B et al. Science. 2016 Dec 16;354(6318):1434-1437.

Designed proteins induce the formation of nanocage-containing extracellular vesicles. Votteler J, Ogohara C et al. Nature. 2016 Dec 8;540(7632):292-295.

The pathway to GTPase activation of elongation factor SelB on the ribosome. Fischer N, Neumann P et al. Nature. 2016 Dec 1;540(7631):80-85.

Ribosome-stalk biogenesis is coupled with recruitment of nuclear-export factor to the nascent 60S subunit. Sarkar A, Pech M et al. Nat Struct Mol Biol. 2016 Dec;23(12):1074-1082.

Structure of RagB, a major immunodominant outer-membrane surface receptor antigen of Porphyromonas gingivalis. Goulas T, Garcia-Ferrer I et al. Mol Oral Microbiol. 2016 Dec;31(6):472-485.

Structure and function of the nuclear pore complex cytoplasmic mRNA export platform. Fernandez-Martinez J, Kim SJ et al. Cell. 2016 Nov 17;167(5):1215-1228.e25.

An HIV-1 antibody from an elite neutralizer implicates the fusion peptide as a site of vulnerability. van Gils MJ, van den Kerkhof TL et al. Nat Microbiol. 2016 Nov 14;2:16199.

Mechanisms of insertion of dCTP and dTTP opposite the DNA lesion O6-methyl-2'-deoxyguanosine by human DNA polymerase η. Patra A, Zhang Q et al. J Biol Chem. 2016 Nov 11;291(46):24304-24313.

Cryo-EM study of start codon selection during archaeal translation initiation. Coureux PD, Lazennec-Schurdevin C et al. Nat Commun. 2016 Nov 7;7:13366.

Atomic model for the membrane-embedded Vo motor of a eukaryotic V-ATPase. Mazhab-Jafari MT, Rohou A et al. Nature. 2016 Nov 3;539(7627):118-122.

Common evolutionary origin of procapsid proteases, phage tail tubes, and tubes of bacterial type VI secretion systems. Fokine A, Rossmann MG. Structure. 2016 Nov 1;24(11):1928-1935.

The structure of the polycystic kidney disease channel PKD2 in lipid nanodiscs. Shen PS, Yang X et al. Cell. 2016 Oct 20;167(3):763-773.e11.

Asymmetric cryo-EM structure of the canonical Allolevivirus Qβ reveals a single maturation protein and the genomic ssRNA in situ. Gorzelnik KV, Cui Z et al. Proc Natl Acad Sci USA. 2016 Oct 11;113(41):11519-11524.

A near atomic structure of the active human apoptosome. Cheng TC, Hong C et al. eLife. 2016 Oct 4;5. pii: e17755.

Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy. Walls AC, Tortorici MA et al. Nat Struct Mol Biol. 2016 Oct;23(10):899-905.

The architecture of the mammalian respirasome. Gu J, Wu M et al. Nature. 2016 Sep 29;537(7622):639-43.

Molecular architecture of the Saccharomyces cerevisiae activated spliceosome. Rauhut R, Fabrizio P et al. Science. 2016 Sep 23;353(6306):1399-405.

Visualizing red blood cell sickling and the effects of inhibition of sphingosine kinase 1 using soft X-ray tomography. Darrow MC, Zhang Y et al. J Cell Sci. 2016 Sep 15;129(18):3511-7.

The infectious particle of insect-borne totivirus-like Omono River virus has raised ridges and lacks fibre complexes. Okamoto K, Miyazaki N et al. Sci Rep. 2016 Sep 12;6:33170.

The S. pombe mRNA decapping complex recruits cofactors and an Edc1-like activator through a single dynamic surface. Wurm JP, Overbeck J, Sprangers R. RNA. 2016 Sep;22(9):1360-72.

Spiral architecture of the Hsp104 disaggregase reveals the basis for polypeptide translocation. Yokom AL, Gates SN et al. Nat Struct Mol Biol. 2016 Sep;23(9):830-7.

Cryo-EM structure of a tetrameric cyanobacterial photosystem I complex reveals novel subunit interactions. Semchonok DA, Li M et al. Biochim Biophys Acta. 2016 Sep;1857(9):1619-26.

Structure of the STRA6 receptor for retinol uptake. Chen Y, Clarke OB et al. Science. 2016 Aug 26;353(6302):aad8266.

Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ. Koning RI, Gomez-Blanco J et al. Nat Commun. 2016 Aug 26;7:12524.

Light-dependent chlorophyll f synthase is a highly divergent paralog of PsbA of photosystem II. Ho MY, Shen G et al. Science. 2016 Aug 26;353(6302):aaf9178.

Structure of the voltage-gated K+ channel Eag1 reveals an alternative voltage sensing mechanism. Whicher JR, MacKinnon R. Science. 2016 Aug 12;353(6300):664-9.

The acidic domain is a unique structural feature of the splicing factor SYNCRIP. Beuck C, Williamson JR et al. Protein Sci. 2016 Aug;25(8):1545-50.

HU multimerization shift controls nucleoid compaction. Hammel M, Amlanjyoti D et al. Sci Adv. 2016 Jul 29;2(7):e1600650.

Tetracarbalane structures: nido polyhedra and non-spherical deltahedra. Attia AA, Lupan A, King RB. Dalton Trans. 2016 Jul 28;45(28):11528-39.

Helical arrays of U-shaped ATP synthase dimers form tubular cristae in ciliate mitochondria. Mühleip AW, Joos F et al. Proc Natl Acad Sci USA. 2016 Jul 26;113(30):8442-7.

Architecture of the 90S pre-ribosome: A structural view on the birth of the eukaryotic ribosome. Kornprobst M, Turk M et al. Cell. 2016 Jul 14;166(2):380-93.

A C2HC zinc finger is essential for the RING-E2 interaction of the ubiquitin ligase RNF125. Bijlmakers MJ, Teixeira JM et al. Sci Rep. 2016 Jul 14;6:29232.

Design of a hyperstable 60-subunit protein icosahedron. Hsia Y, Bale JB et al. Nature. 2016 Jul 7;535(7610):136-9.

Cryo-EM structure of a human cytoplasmic actomyosin complex at near-atomic resolution. von der Ecken J, Heissler SM et al. Nature. 2016 Jun 30;534(7609):724-8.

Rational design and validation of a vanilloid-sensitive TRPV2 ion channel. Yang F, Vu S et al. Proc Natl Acad Sci USA. 2016 Jun 28;113(26):E3657-66.

Atomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase. Verba KA, Wang RY et al. Science. 2016 Jun 24;352(6293):1542-7.

TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action. Gao Y, Cao E et al. Nature. 2016 Jun 16;534(7607):347-51.

LoFEx - A local framework for calculating excitation energies: Illustrations using RI-CC2 linear response theory. Baudin P, Kristensen K. J Chem Phys. 2016 Jun 14;144(22):224106.

The C-terminal arm of the human papillomavirus major capsid protein is immunogenic and involved in virus-host interaction. Li Z, Yan X et al. Structure. 2016 Jun 7;24(6):874-85.

Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes. Wu S, Tutuncuoglu B et al. Nature. 2016 Jun 2;534(7605):133-7.

The plant natriuretic peptide receptor is a guanylyl cyclase and enables cGMP-dependent signaling. Turek I, Gehring C. Plant Mol Biol. 2016 Jun;91(3):275-86.

Using cryo-EM to map small ligands on dynamic metabolic enzymes: studies with glutamate dehydrogenase. Borgnia MJ, Banerjee S et al. Mol Pharmacol. 2016 Jun;89(6):645-51.

Structure of the intact ATM/Tel1 kinase. Wang X, Chu H et al. Nat Commun. 2016 May 27;7:11655.

Near-atomic resolution visualization of human transcription promoter opening. He Y, Yan C et al. Nature. 2016 May 19;533(7603):359-65.

Structure of the T4 baseplate and its function in triggering sheath contraction. Taylor NM, Prokhorov NS et al. Nature. 2016 May 19;533(7603):346-52.

Transcription initiation complex structures elucidate DNA opening. Plaschka C, Hantsche M et al. Nature. 2016 May 19;533(7603):353-8.

Crystal structures of apo and liganded 4-oxalocrotonate decarboxylase uncover a structural basis for the metal-assisted decarboxylation of a vinylogous β-keto acid. Guimarães SL, Coitinho JB et al. Biochemistry. 2016 May 10;55(18):2632-45.

Crystal structure of human herpesvirus 6B tegument protein U14. Wang B, Nishimura M et al. PLoS Pathog. 2016 May 6;12(5):e1005594.

Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein. Pande K, Hutchison CD et al. Science. 2016 May 6;352(6286):725-9.

Cholesteryl ester transfer between lipoproteins does not require a ternary tunnel complex with CETP. Lauer ME, Graff-Meyer A et al. J Struct Biol. 2016 May;194(2):191-8.

Mapping and modeling of a strain-specific epitope in the Norwalk virus capsid inner shell. Parra GI, Sosnovtsev SV et al. Virology. 2016 May;492:232-41.

Structure and organization of heteromeric AMPA-type glutamate receptors. Herguedas B, García-Nafría J et al. Science. 2016 Apr 29;352(6285):aad3873.

Crystal structure of the human σ1 receptor. Schmidt HR, Zheng S et al. Nature. 2016 Apr 28;532(7600):527-30.