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Citations (partial list)

Atomic model for the dimeric FO region of mitochondrial ATP synthase. Guo H, Bueler SA, Rubinstein JL. Science. 2017 Nov 17;358(6365):936-940.

Structural basis of bacterial transcription activation. Liu B, Hong C et al. Science. 2017 Nov 17;358(6365):947-951.

Customizable de novo design strategies for DOCK: Application to HIVgp41 and other therapeutic targets. Allen WJ, Fochtman BC et al. J Comput Chem. 2017 Nov 15;38(30):2641-2663.

Structural insight into TPX2-stimulated microtubule assembly. Zhang R, Roostalu J et al. eLife. 2017 Nov 9;6. pii: e30959.

Structure of the mitochondrial inner membrane AAA+ protease YME1 gives insight into substrate processing. Puchades C, Rampello AJ et al. Science. 2017 Nov 3;358(6363). pii: eaao0464.

Design of coiled-coil protein-origami cages that self-assemble in vitro and in vivo. Ljubetič A, Lapenta F et al. Nat Biotechnol. 2017 Nov;35(11):1094-1101.

Solvatochromism and preferential solvation of Brooker's merocyanine in water-methanol mixtures. Tanaka Y, Kawashima Y et al. J Comput Chem. 2017 Oct 30;38(28):2411-2419.

CryoEM structure of Saccharomyces cerevisiae U1 snRNP offers insight into alternative splicing. Li X, Liu S et al. Nat Commun. 2017 Oct 19;8(1):1035.

Capsids and genomes of jumbo-sized bacteriophages reveal the evolutionary reach of the HK97 fold. Hua J, Huet A et al. MBio. 2017 Oct 17;8(5). pii: e01579-17.

Competing scaffolding proteins determine capsid size during mobilization of Staphylococcus aureus pathogenicity islands. Dearborn AD, Wall EA et al. eLife. 2017 Oct 6;6. pii: e30822.

Conformational entropy as collective variable for proteins. Palazzesi F, Valsson O, Parrinello M. J Phys Chem Lett. 2017 Oct 5;8(19):4752-4756

Cryo-EM Structures Reveal Mechanism and Inhibition of DNA Targeting by a CRISPR-Cas Surveillance Complex. Guo TW, Bartesaghi A et al. Cell. 2017 Oct 5;171(2):414-426.e12.

Structure of the human mitochondrial ribosome studied in situ by cryoelectron tomography. Englmeier R, Pfeffer S, Förster F. Structure. 2017 Oct 3;25(10):1574-1581.e2.

A PDZ-like domain mediates the dimerization of 11R-lipoxygenase. Eek P, Põldemaa K et al. Biochim Biophys Acta. 2017 Oct;1862(10 Pt A):1121-1128.

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus. Matzov D, Aibara S et al. Nat Commun. 2017 Sep 28;8(1):723.

Actin-based protrusions of migrating neutrophils are intrinsically lamellar and facilitate direction changes. Fritz-Laylin LK, Riel-Mehan M et al. eLife. 2017 Sep 26;6. pii: e26990.

GaudiMM: A modular multi-objective platform for molecular modeling. Rodríguez-Guerra Pedregal J, Sciortino G et al. J Comput Chem. 2017 Sep 15;38(24):2118-2126.

Structural basis of MsbA-mediated lipopolysaccharide transport. Mi W, Li Y et al. Nature. 2017 Sep 14;549(7671):233-237.

Lis1 has two opposing modes of regulating cytoplasmic dynein. DeSantis ME, Cianfrocco MA et al. Cell. 2017 Sep 7;170(6):1197-1208.e12.

Refined cryo-EM structure of the T4 tail tube: Exploring the lowest dose limit. Zheng W, Wang F et al. Structure. 2017 Sep 5;25(9):1436-1441.e2.

Structures of Medicago truncatula L-histidinol dehydrogenase show rearrangements required for NAD+ binding and the cofactor positioned to accept a hydride. Ruszkowski M, Dauter Z. Sci Rep. 2017 Sep 5;7(1):10476.

Differential replication of foot-and-mouth disease viruses in mice determine lethality. Cacciabue M, García-Núñez MS et al. Virology. 2017 Sep;509:195-204.

Katanin spiral and ring structures shed light on power stroke for microtubule severing. Zehr E, Szyk A et al. Nat Struct Mol Biol. 2017 Sep;24(9):717-725.

ISWI chromatin remodellers sense nucleosome modifications to determine substrate preference. Dann GP, Liszczak GP et al. Nature. 2017 Aug 31;548(7669):607-611.

Morphologies of synaptic protein membrane fusion interfaces. Gipson P, Fukuda Y et al. Proc Natl Acad Sci USA. 2017 Aug 22;114(34):9110-9115.

Structural insights into the catalytic mechanism of a sacrificial sulfur insertase of the N-type ATP pyrophosphatase family, LarE. Fellner M, Desguin B et al. Proc Natl Acad Sci USA. 2017 Aug 22;114(34):9074-9079.

A cyclic oligonucleotide signaling pathway in type III CRISPR-Cas systems. Kazlauskiene M, Kostiuk G et al. Science. 2017 Aug 11;357(6351):605-609.

Proteins evolve on the edge of supramolecular self-assembly. Garcia-Seisdedos H, Empereur-Mot C et al. Nature. 2017 Aug 10;548(7666):244-247.

Enriching traditional protein-protein interaction networks with alternative conformations of proteins. Halakou F, Kilic ES et al. Sci Rep. 2017 Aug 3;7(1):7180.

Cryo-EM structure of the SAGA and NuA4 coactivator subunit Tra1 at 3.7 angstrom resolution. Díaz-Santín LM, Lukoyanova N et al. eLife. 2017 Aug 2;6. pii: e28384.

Crystal structure and functional analysis of Leishmania major pseudoperoxidase. Chreifi G, Dejam D, Poulos TL. J Biol Inorg Chem. 2017 Aug;22(6):919-927.

RosettaES: a sampling strategy enabling automated interpretation of difficult cryo-EM maps. Frenz B, Walls AC et al. Nat Methods. 2017 Aug;14(8):797-800.

ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells. Ou HD, Phan S et al. Science. 2017 Jul 28;357(6349):eaag0025.

Capturing protein communities by structural proteomics in a thermophilic eukaryote. Kastritis PL, O'Reilly FJ et al. Mol Syst Biol. 2017 Jul 25;13(7):936.

Ratchet-like polypeptide translocation mechanism of the AAA+ disaggregase Hsp104. Gates SN, Yokom AL et al. Science. 2017 Jul 21;357(6348):273-279.

Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors. Serra F, Baù D et al. PLoS Comput Biol. 2017 Jul 19;13(7):e1005665.

Using molecular visualization to explore protein structure and function and enhance student facility with computational tools. Terrell CR, Listenberger LL. Biochem Mol Biol Educ. 2017 Jul 8;45(4):318-328.

Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1. Li Z, Han K et al. Nat Chem Biol. 2017 Jul;13(7):757-763.

Dual host specificity of phage SP6 is facilitated by tailspike rotation. Tu J, Park T et al. Virology. 2017 Jul;507:206-215.

Improved metrics for comparing structures of macromolecular assemblies determined by 3D electron-microscopy. Joseph AP, Lagerstedt I et al. J Struct Biol. 2017 Jul;199(1):12-26.

Atomic structure of the human cytomegalovirus capsid with its securing tegument layer of pp150. Yu X, Jih J et al. Science. 2017 Jun 30;356(6345):eaam6892.

Structure and conformational dynamics of scaffolded DNA origami nanoparticles. Pan K, Bricker WP et al. Nucleic Acids Res. 2017 Jun 20;45(11):6284-6298.

Structural mechanism of ATP-independent transcription initiation by RNA polymerase I. Han Y, Yan C et al. eLife. 2017 Jun 17;6. pii: e27414.

Effects of myosin variants on interacting-heads motif explain distinct hypertrophic and dilated cardiomyopathy phenotypes. Alamo L, Ware JS et al. eLife. 2017 Jun 13;6. pii: e24634.

Cryo-EM structure of the activated GLP-1 receptor in complex with a G protein. Zhang Y, Sun B et al. Nature. 2017 Jun 8;546(7657):248-253.

The CaMKII holoenzyme structure in activation-competent conformations. Myers JB, Zaegel V et al. Nat Commun. 2017 Jun 7;8:15742.

Structural basis for antibody-mediated neutralization of Lassa virus. Hastie KM, Zandonatti MA et al. Science. 2017 Jun 2;356(6341):923-928.

Cryo-electron microscopy of chromatin biology. Wilson MD, Costa A. Acta Crystallogr D Struct Biol. 2017 Jun 1;73(Pt 6):541-548.

Halogenated ether, alcohol, and alkane anesthetics activate TASK-3 tandem pore potassium channels likely through a common mechanism. Luethy A, Boghosian JD et al. Mol Pharmacol. 2017 Jun;91(6):620-629.

Phase-plate cryo-EM structure of a class B GPCR-G-protein complex. Liang YL, Khoshouei M et al. Nature. 2017 Jun 1;546(7656):118-123.

Large-scale analysis of hydrogen bond interaction patterns in protein-ligand interfaces. Nittinger E, Inhester T et al. J Med Chem. 2017 May 25;60(10):4245-4257.

ArbAlign: A tool for optimal alignment of arbitrarily ordered isomers using the Kuhn-Munkres algorithm. Temelso B, Mabey JM et al. J Chem Inf Model. 2017 May 22;57(5):1045-1054.

Cryo-EM structure of human adenovirus D26 reveals the conservation of structural organization among human adenoviruses. Yu X, Veesler D et al. Sci Adv. 2017 May 10;3(5):e1602670.

Relation between molecular electronic structure and nuclear spin-induced circular dichroism. Štěpánek P, Coriani S et al. Sci Rep. 2017 Apr 24;7:46617.

Architecture of a transcribing-translating expressome. Kohler R, Mooney RA et al. Science. 2017 Apr 14;356(6334):194-197.

Mediator structure and rearrangements required for holoenzyme formation. Tsai KL, Yu X et al. Nature. 2017 Apr 13;544(7649):196-201.

PLP and GABA trigger GabR-mediated transcription regulation in Bacillus subtilis via external aldimine formation. Wu R, Sanishvili R et al. Proc Natl Acad Sci USA. 2017 Apr 11;114(15):3891-3896.

Structure of the Ebola virus glycoprotein spike within the virion envelope at 11 Å resolution. Beniac DR, Booth TF. Sci Rep. 2017 Apr 11;7:46374.

Structural basis of protein translocation by the Vps4-Vta1 AAA ATPase. Monroe N, Han H et al. eLife. 2017 Apr 5;6. pii: e24487.

Structural, functional, and clinical characterization of a novel PTPN11 mutation cluster underlying Noonan syndrome. Pannone L, Bocchinfuso G et al. Hum Mutat. 2017 Apr;38(4):451-459.

Self-assembly of genetically encoded DNA-protein hybrid nanoscale shapes. Praetorius F, Dietz H. Science. 2017 Mar 24;355(6331).

Accurate model annotation of a near-atomic resolution cryo-EM map. Hryc CF, Chen DH et al. Proc Natl Acad Sci USA. 2017 Mar 21;114(12):3103-3108.

Structural basis of the day-night transition in a bacterial circadian clock. Tseng R, Goularte NF et al. Science. 2017 Mar 17;355(6330):1174-1180.

Structures of the cyanobacterial circadian oscillator frozen in a fully assembled state. Snijder J, Schuller JM et al. Science. 2017 Mar 17;355(6330):1181-1184.

3D printing of biomolecular models for research and pedagogy. Da Veiga Beltrame E, Tyrwhitt-Drake J et al. J Vis Exp. 2017 Mar 13;(121).

Double-stranded RNA virus outer shell assembly by bona fide domain-swapping. Sun Z, El Omari K et al. Nat Commun. 2017 Mar 13;8:14814.

Molecular architecture of the major membrane ring component of the nuclear pore complex. Upla P, Kim SJ et al. Structure. 2017 Mar 7;25(3):434-445.

Self-assembly of nanoparticles into biomimetic capsid-like nanoshells. Yang M, Chan H et al. Nat Chem. 2017 Mar;9(3):287-294.

The cytotoxic Staphylococcus aureus PSMα3 reveals a cross-α amyloid-like fibril. Tayeb-Fligelman E, Tabachnikov O et al. Science. 2017 Feb 24;355(6327):831-833.

Differential contribution of transmembrane domains IV, V, VI, and VII to human angiotensin II type 1 receptor homomer formation. Young BM, Nguyen E et al. J Biol Chem. 2017 Feb 24;292(8):3341-3350.

Structure of a LOV protein in apo-state and implications for construction of LOV-based optical tools. Arinkin V, Granzin J et al. Sci Rep. 2017 Feb 17;7:42971.

Mutations in ATP6V1E1 or ATP6V1A cause autosomal-recessive cutis laxa. Van Damme T, Gardeitchik T et al. Am J Hum Genet. 2017 Feb 2;100(2):216-227.

Molecular insights into lipid-assisted Ca2+ regulation of the TRP channel Polycystin-2. Wilkes M, Madej MG et al. Nat Struct Mol Biol. 2017 Feb;24(2):123-130.

Architecture of the yeast Elongator complex. Dauden MI, Kosinski J et al. EMBO Rep. 2017 Feb;18(2):264-279.

Structure of the immature Zika virus at 9 Å resolution. Prasad VM, Miller AS et al. Nat Struct Mol Biol. 2017 Feb;24(2):184-186.

Hydrogen positions in single nanocrystals revealed by electron diffraction. Palatinus L, Brázda P et al. Science. 2017 Jan 13;355(6321):166-169.

Architecture of the yeast small subunit processome. Chaker-Margot M, Barandun J et al. Science. 2017 Jan 13;355(6321):aal1880.

Principles for designing proteins with cavities formed by curved β sheets. Marcos E, Basanta B et al. Science. 2017 Jan 13;355(6321):201-206.

Structure of actomyosin rigour complex at 5.2 Å resolution and insights into the ATPase cycle mechanism. Fujii T, Namba K. Nat Commun. 2017 Jan 9;8:13969.

Cryo-EM structures and atomic model of the HIV-1 strand transfer complex intasome. Passos DO, Li M et al. Science. 2017 Jan 6;355(6320):89-92.

A supramolecular assembly mediates lentiviral DNA integration. Ballandras-Colas A, Maskell DP et al. Science. 2017 Jan 6;355(6320):93-95.

Cryo-EM structure of the open high-conductance Ca2+-activated K+ channel. Tao X, Hite RK, MacKinnon R. Nature. 2017 Jan 5;541(7635):46-51.

In situ structures of the genome and genome-delivery apparatus in a single-stranded RNA virus. Dai X, Li Z et al. Nature. 2017 Jan 5;541(7635):112-116.

The structure and flexibility of conical HIV-1 capsids determined within intact virions. Mattei S, Glass B et al. Science. 2016 Dec 16;354(6318):1434-1437.

Designed proteins induce the formation of nanocage-containing extracellular vesicles. Votteler J, Ogohara C et al. Nature. 2016 Dec 8;540(7632):292-295.

The pathway to GTPase activation of elongation factor SelB on the ribosome. Fischer N, Neumann P et al. Nature. 2016 Dec 1;540(7631):80-85.

Ribosome-stalk biogenesis is coupled with recruitment of nuclear-export factor to the nascent 60S subunit. Sarkar A, Pech M et al. Nat Struct Mol Biol. 2016 Dec;23(12):1074-1082.

Structure of RagB, a major immunodominant outer-membrane surface receptor antigen of Porphyromonas gingivalis. Goulas T, Garcia-Ferrer I et al. Mol Oral Microbiol. 2016 Dec;31(6):472-485.

Structure and function of the nuclear pore complex cytoplasmic mRNA export platform. Fernandez-Martinez J, Kim SJ et al. Cell. 2016 Nov 17;167(5):1215-1228.e25.

An HIV-1 antibody from an elite neutralizer implicates the fusion peptide as a site of vulnerability. van Gils MJ, van den Kerkhof TL et al. Nat Microbiol. 2016 Nov 14;2:16199.

Mechanisms of insertion of dCTP and dTTP opposite the DNA lesion O6-methyl-2'-deoxyguanosine by human DNA polymerase η. Patra A, Zhang Q et al. J Biol Chem. 2016 Nov 11;291(46):24304-24313.

Cryo-EM study of start codon selection during archaeal translation initiation. Coureux PD, Lazennec-Schurdevin C et al. Nat Commun. 2016 Nov 7;7:13366.

Atomic model for the membrane-embedded Vo motor of a eukaryotic V-ATPase. Mazhab-Jafari MT, Rohou A et al. Nature. 2016 Nov 3;539(7627):118-122.

Common evolutionary origin of procapsid proteases, phage tail tubes, and tubes of bacterial type VI secretion systems. Fokine A, Rossmann MG. Structure. 2016 Nov 1;24(11):1928-1935.

The structure of the polycystic kidney disease channel PKD2 in lipid nanodiscs. Shen PS, Yang X et al. Cell. 2016 Oct 20;167(3):763-773.e11.

Asymmetric cryo-EM structure of the canonical Allolevivirus Qβ reveals a single maturation protein and the genomic ssRNA in situ. Gorzelnik KV, Cui Z et al. Proc Natl Acad Sci USA. 2016 Oct 11;113(41):11519-11524.

A near atomic structure of the active human apoptosome. Cheng TC, Hong C et al. eLife. 2016 Oct 4;5. pii: e17755.

Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy. Walls AC, Tortorici MA et al. Nat Struct Mol Biol. 2016 Oct;23(10):899-905.

The architecture of the mammalian respirasome. Gu J, Wu M et al. Nature. 2016 Sep 29;537(7622):639-43.

Molecular architecture of the Saccharomyces cerevisiae activated spliceosome. Rauhut R, Fabrizio P et al. Science. 2016 Sep 23;353(6306):1399-405.