[Chimera-users] Chromophore missing

[Elaine Meng]

Hi Marco,
Yes, I tried it before I sent the answer!

Only the menu is missing the residue.

Best,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On Dec 16, 2022, at 9:36 AM, Marco Sette via Chimera-users <chimera-users at cgl.ucsf.edu> wrote:
> 
> Hi Elaine,
> 
> select :CH6 or disp :CH6 work in Chimera as well.
> 
> Thanks a lot,
> 
> Marco
> 
> 
> Il 16/12/2022 18:18, Elaine Meng ha scritto:
>> Hi Marco,
>> Hmmm, it may be a bug that this residue does not appear in the Select... Residue menu.
>> 
>> However, I can see by looking in the PDB file (or by opening this structure in ChimeraX) that the nonstandard residue name is CH6, so you can
>> 
>> disp :CH6
>> 
>> for example, or do other things to it, e.g. color, select, ...
>> 
>> select :CH6
>> 
>> The residue does appear in the ChimeraX menu Select... Residue, so the bug seems to be specific to Chimera.
>> 
>> I hope this helps,
>> Elaine
>> -----
>> Elaine C. Meng, Ph.D.
>> UCSF Chimera(X) team
>> Department of Pharmaceutical Chemistry
>> University of California, San Francisco
>> 
>> 
>>> On Dec 16, 2022, at 8:49 AM, Marco Sette via Chimera-users <chimera-users at cgl.ucsf.edu> wrote:
>>> 
>>> Dear all,
>>> 
>>> When I fetch a protein with a chromophore (PDB code 2h5q), the chromophore, not a standard one, is missing, and not present in the Select-Residue menu. Is there any way to obtain it?
>>> 
>>> Thanks,
>>> 
>>> Marco
> 
> -- 
> Dr Marco Sette, PhD.
> Department of Chemical Sciences and Technology
> University of Rome, "Tor Vergata"
> via della Ricerca Scientifica, 00133, Rome, Italy
> e-mail: sette at uniroma2.it
> Tel.: +39-0672594424
> 
> 
> -- 
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