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UCSF ChimeraX Citations

Selected Citations

Cryo-EM structure of the complete E. coli DNA gyrase nucleoprotein complex. Vanden Broeck A, Lotz C et al. Nat Commun. 2019 Oct 30;10(1):4935.

Structural basis for the docking of mTORC1 on the lysosomal surface. Rogala KB, Gu X et al. Science. 2019 Oct 25;366(6464):468-475.

Active site rearrangement and structural divergence in prokaryotic respiratory oxidases. Safarian S, Hahn A et al. Science. 2019 Oct 4;366(6461):100-104.

An antibody against the F glycoprotein inhibits Nipah and Hendra virus infections. Dang HV, Chan YP et al. Nat Struct Mol Biol. 2019 Oct;26(10):980-987.

Cryo-EM structure of the ClpXP protein degradation machinery. Gatsogiannis C, Balogh D et al. Nat Struct Mol Biol. 2019 Oct;26(10):946-954.

Robust and automated detection of subcellular morphological motifs in 3D microscopy images. Driscoll MK, Welf ES et al. Nat Methods. 2019 Oct;16(10):1037-1044.

A unified mechanism for intron and exon definition and back-splicing. Li X, Liu S et al. Nature. 2019 Sep 19;573(7774):375-380.

Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery. Saurer M, Ramrath DJF et al. Science. 2019 Sep 13;365(6458):1144-1149.

CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation. Wongpalee SP, Liu S et al. Nat Commun. 2019 Sep 2;10(1):3916.

Structure of the dynein-2 complex and its assembly with intraflagellar transport trains. Toropova K, Zalyte R et al. Nat Struct Mol Biol. 2019 Sep;26(9):823-829.

Conformational transitions of a neurotensin receptor 1-Gi1 complex. Kato HE, Zhang Y et al. Nature. 2019 Aug 1;572(7767):80-85.

A one-gate elevator mechanism for the human neutral amino acid transporter ASCT2. Garaeva AA, Guskov A et al. Nat Commun. 2019 Jul 31;10(1):3427.

Structural insights into flagellar stator-rotor interactions. Chang Y, Moon KH et al. eLife. 2019 Jul 17;8. pii: e48979.

Archiving and disseminating integrative structure models. Vallat B, Webb B et al. J Biomol NMR. 2019 Jul;73(6-7):385-398.

Cryo-EM structure of the rhodopsin-Gαi-βγ complex reveals binding of the rhodopsin C-terminal tail to the gβ subunit. Tsai CJ, Marino J et al. eLife. 2019 Jun 28;8. pii: e46041.

Structure and function of Vms1 and Arb1 in RQC and mitochondrial proteome homeostasis. Su T, Izawa T et al. Nature. 2019 Jun 27;570(7762):538-542.

Structural and mutational analysis of the ribosome-arresting human XBP1u. Shanmuganathan V, Schiller N et al. eLife. 2019 Jun 27;8. pii: e46267.

Cryo-EM structure of Neurospora crassa respiratory complex IV. Bausewein T, Nussberger S, Kühlbrandt W. IUCrJ. 2019 Jun 26;6(Pt 4):773-780.

High-resolution cryo-EM structures of outbreak strain human norovirus shells reveal size variations. Jung J, Grant T et al. Proc Natl Acad Sci USA. 2019 Jun 25;116(26):12828-12832.

Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F1-Fo coupling. Murphy BJ, Klusch N et al. Science. 2019 Jun 21;364(6446). pii: eaaw9128.

Conformational switches control early maturation of the eukaryotic small ribosomal subunit. Hunziker M, Barandun J et al. eLife. 2019 Jun 17;8. pii: e45185.

Structural basis for human coronavirus attachment to sialic acid receptors. Alejandra Tortorici M, Walls AC et al. Nat Struct Mol Biol. 2019 Jun;26(6):481-489.

Developing picornaviruses for cancer therapy. McCarthy C, Jayawardena N et al. Cancers (Basel). 2019 May 16;11(5). pii: E685.

Cryo-EM structures of the pore-forming A subunit from the Yersinia entomophaga ABC toxin. Piper SJ, Brillault L et al. Nat Commun. 2019 Apr 26;10(1):1952.

Structure reveals a mechanism of CRISPR-RNA-guided nuclease recruitment and anti-CRISPR viral mimicry. Rollins MF, Chowdhury S et al. Mol Cell. 2019 Apr 4;74(1):132-142.e5.

Protein denaturation at the air-water interface and how to prevent it. D'Imprima E, Floris D et al. eLife. 2019 Apr 1;8. pii: e42747.

Structural snapshots of 26S proteasome reveal tetraubiquitin-induced conformations. Ding Z, Xu C et al. Mol Cell. 2019 Mar 21;73(6):1150-1161.e6.

Unexpected receptor functional mimicry elucidates activation of coronavirus fusion. Walls AC, Xiong X et al. Cell. 2019 Feb 21;176(5):1026-1039.e15.

Stepwise activation mechanism of the scramblase nhTMEM16 revealed by cryo-EM. Kalienkova V, Clerico Mosina V et al. eLife. 2019 Feb 21;8. pii: e44364.

Structure of a bacterial ATP synthase. Guo H, Suzuki T, Rubinstein JL. eLife. 2019 Feb 6;8. pii: e43128.

Structure of a signaling cannabinoid receptor 1-G protein complex. Krishna Kumar K, Shalev-Benami M et al. Cell. 2019 Jan 24;176(3):448-458.e12.

Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer. Schuller JM, Birrell JA et al. Science. 2019 Jan 18;363(6424):257-260.

Calicivirus VP2 forms a portal-like assembly following receptor engagement. Conley MJ, McElwee M et al. Nature. 2019 Jan 17;565(7739):377-381.

Ribosome-NatA architecture reveals that rRNA expansion segments coordinate N-terminal acetylation. Knorr AG, Schmidt C et al. Nat Struct Mol Biol. 2019 Jan;26(1):35-39.

CRISPR RNA-guided autonomous delivery of Cas9. Wilkinson RA, Martin C et al. Nat Struct Mol Biol. 2019 Jan;26(1):14-24.

Cryo-EM structure of the native butyrylcholinesterase tetramer reveals a dimer of dimers stabilized by a superhelical assembly. Leung MR, van Bezouwen LS et al. Proc Natl Acad Sci USA. 2018 Dec 26;115(52):13270-13275.

Structure of the type VI secretion system TssK-TssF-TssG baseplate subcomplex revealed by cryo-electron microscopy. Park YJ, Lacourse KD et al. Nat Commun. 2018 Dec 19;9(1):5385.

Microtubule structure by cryo-EM: snapshots of dynamic instability. Manka SW, Moores CA. Essays Biochem. 2018 Dec 7;62(6):737-751.

Substrate-engaged 26S proteasome structures reveal mechanisms for ATP-hydrolysis-driven translocation. de la Peña AH, Goodall EA et al. Science. 2018 Nov 30;362(6418). pii: eaav0725.

4D cell biology: big data image analytics and lattice light-sheet imaging reveal dynamics of clathrin-mediated endocytosis in stem cell-derived intestinal organoids. Schöneberg J, Dambournet D et al. Mol Biol Cell. 2018 Nov 26;29(24):2959-2968.

Structural basis for cholesterol transport-like activity of the Hedgehog receptor Patched. Zhang Y, Bulkley DP et al. Cell. 2018 Nov 15;175(5):1352-1364.e14.

Cryo-EM structure of the Ebola virus nucleoprotein-RNA complex at 3.6 Å resolution. Sugita Y, Matsunami H et al. Nature. 2018 Nov 1;563(7729):137-140.

Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes. Ramrath DJF, Niemann M et al. Science. 2018 Oct 26;362(6413). pii: eaau7735.

Molecular visualization on the holodeck. Goddard TD, Brilliant AA et al. J Mol Biol. 2018 Oct 19;430(21):3982-3996.

Structural basis of the filamin A actin-binding domain interaction with F-actin. Iwamoto DV, Huehn A et al. Nat Struct Mol Biol. 2018 Oct;25(10):918-927.

Structure of the membrane-assembled retromer coat determined by cryo-electron tomography. Kovtun O, Leneva N et al. Nature. 2018 Sep 27;561(7724):561-564.

Structural basis for potent and broad inhibition of HIV-1 RT by thiophene[3,2-d]pyrimidine non-nucleoside inhibitors. Yang Y, Kang D et al. eLife. 2018 Jul 25;7. pii: e36340.

Development of a prototype system for archiving integrative/hybrid structure models of biological macromolecules. Vallat B, Webb B et al. Structure. 2018 Jun 5;26(6):894-904.e2.

ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps. Croll TI. Acta Crystallogr D Struct Biol. 2018 Jun 1;74(Pt 6).

Structure, mechanism, and regulation of the chloroplast ATP synthase. Hahn A, Vonck J et al. Science. 2018 May 11;360(6389). pii: eaat4318.

Virtual-reality applications give science a new dimension. Matthews D. Nature. 2018 Apr 30; 557:127-128.

Modular assembly of the nucleolar pre-60S ribosomal subunit. Sanghai ZA, Miller L et al. Nature. 2018 Apr 5;556(7699):126-129.

ATP synthase diseases of mitochondrial genetic origin. Dautant A, Meier T et al. Front Physiol. 2018 Apr 4;9:329.

Structure of the nucleotide exchange factor eIF2B reveals mechanism of memory-enhancing molecule. Tsai JC, Miller-Vedam LE et al. Science. 2018 Mar 30;359(6383).

General prediction of peptide-MHC binding modes using incremental docking: A proof of concept. Antunes DA, Devaurs D et al. Sci Rep. 2018 Mar 12;8(1):4327.

Structure and conformational dynamics of the human spliceosomal Bact complex. Haselbach D, Komarov I et al. Cell. 2018 Jan 25;172(3):454-464.e11.

Automating tasks in protein structure determination with the clipper python module. McNicholas S, Croll T et al. Protein Sci. 2018 Jan;27(1):207-216.

UCSF ChimeraX: Meeting modern challenges in visualization and analysis. Goddard TD, Huang CC et al. Protein Sci. 2018 Jan;27(1):14-25.

Molecular structure of human KATP in complex with ATP and ADP. Lee KPK, Chen J, MacKinnon R. eLife. 2017 Dec 29;6. pii: e32481.

Tectonic conformational changes of a coronavirus spike glycoprotein promote membrane fusion. Walls AC, Tortorici MA et al. Proc Natl Acad Sci USA. 2017 Oct 17;114(42):11157-11162.

Convolutional neural networks for automated annotation of cellular cryo-electron tomograms. Chen M, Dai W et al. Nat Methods. 2017 Oct;14(10):983-985.

Actin-based protrusions of migrating neutrophils are intrinsically lamellar and facilitate direction changes. Fritz-Laylin LK, Riel-Mehan M et al. eLife. 2017 Sep 26;6. pii: e26990.

PDB-Dev: A prototype system for depositing integrative/hybrid structural models. Burley SK, Kurisu G et al. Structure. 2017 Sep 5;25(9):1317-1318.

Atomic structure of Hsp90-Cdc37-Cdk4 reveals that Hsp90 traps and stabilizes an unfolded kinase. Verba KA, Wang RY et al. Science. 2016 Jun 24;352(6293):1542-7.

Structure and membrane remodeling activity of ESCRT-III helical polymers. McCullough J, Clippinger AK et al. Science. 2015 Dec 18;350(6267):1548-51.


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